2024
Jordan A. Welsman, Gunther H. Weber, Oluwamayowa O. Amusat, Anna Giannakou, Lavanya Ramakrishnan,
"Enhancing Electron Microscopy Image Classification Using Data Augmentation",
SC24-W: Workshops of the International Conference for High Performance Computing, Networking, Storage and Analysis,
IEEE,
November 17, 2024,
64-71,
doi: 10.1109/SCW63240.2024.00016
Jan Balewski, Mercy G Amankwah, Roel Van Beeumen, E Wes Bethel, Talita Perciano, Daan Camps,
"Quantum-parallel vectorized data encodings and computations on trapped-ion and transmon QPUs",
Journal,
February 10, 2024,
14,
doi: https://doi.org/10.1038/s41598-024-53720-x
2023
E Wes Bethel, Mercy G Amankwah, Jan Balewski, Roel Van Beeumen, Daan Camps,… more authors » Daniel Huang, Talita Perciano, « fewer authors
"Quantum computing and visualization: A disruptive technological change ahead",
Journal,
November 6, 2023,
43,
doi: https://doi.org/10.1109/MCG.2023.3316932
GM Wallace, Z Bai, N Bertelli, EW Bethel, T Perciano, S Shiraiwa, JC Wright,
"Towards Fast, Accurate Predictions of RF Simulations via Data-driven Modeling: Forward and Lateral Models",
Conference,
AIP Publishing,
August 1, 2023,
2984,
doi: https://doi.org/10.1063/5.0162422
2022
M. G. Amankwah, D. Camps, E. W. Bethel, R. Van Beeumen, T. Perciano,
"Quantum pixel representations and compression for N-dimensional images",
Nature Scientific Reports,
May 11, 2022,
12:7712,
doi: 10.1038/s41598-022-11024-y
M. Avaylon, R. Sadre, Z. Bai, T. Perciano,
"Adaptable Deep Learning and Probabilistic Graphical Model System for Semantic Segmentation",
Advances in Artificial Intelligence and Machine Learnin,
March 31, 2022,
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E. Wes Bethel, Burlen Loring, Utkarsh Ayachit, P. N. Duque, Nicola Ferrier,… more authors » Joseph Insley, Junmin Gu, Kress, Patrick O’Leary, Dave Pugmire, Silvio Rizzi, Thompson, Will Usher, Gunther H. Weber, Brad Whitlock, Wolf, Kesheng Wu, « fewer authors
"Proximity Portability and In Transit, M-to-N Data Partitioning and Movement in SENSEI",
In Situ Visualization for Computational Science,
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E. Wes Bethel, Burlen Loring, Utkarsh Ayatchit, David Camp, P. N. Duque,… more authors » Nicola Ferrier, Joseph Insley, Junmin Gu, Kress, Patrick O’Leary, David Pugmire, Silvio Rizzi, Thompson, Gunther H. Weber, Brad Whitlock, Matthew Wolf, Kesheng Wu, « fewer authors
"The SENSEI Generic In Situ Interface: Tool and Processing Portability at Scale",
In Situ Visualization for Computational Science,
(
2022)
doi: 10.1007/978-3-030-81627-8_13
Sugeerth Murugesan, Mariam Kiran, Bernd Hamann, Gunther H. Weber,
"Netostat: Analyzing Dynamic Flow Patterns in High-Speed Networks",
Cluster Computing,
2022,
doi: 10.1007/s10586-022-03543-0
C Varadharajan, AP Appling, B Arora, DS Christianson, VC Hendrix, V Kumar,… more authors » AR Lima, J Müller, S Oliver, M Ombadi, T Perciano, JM Sadler, H Weierbach, JD Willard, Z Xu, J Zwart, « fewer authors
"Can machine learning accelerate process understanding and decision-relevant predictions of river water quality?",
Hydrological Processes,
January 1, 2022,
36,
doi: 10.1002/hyp.14565
2021
Hamish A. Carr, Gunther H. Weber, Christopher M. Sewell, Oliver R\ ubel,… more authors » Patricia Fasel, James P. Ahrens, « fewer authors
"Scalable Contour Tree Computation by Data Parallel Peak Pruning",
Transactions on Visualization and Computer Graphics,
2021,
27:2437--2454,
doi: 10.1109/TVCG.2019.2948616
Hamish Carr, Oliver Rübel, Gunther H. Weber, James Ahrens,
"Optimization and Augmentation for Data Parallel Contour Trees",
IEEE Transactions on Visualization and Computer Graphics,
2021,
doi: 10.1109/TVCG.2021.3064385
Robbie Sadre, Colin Ophus, Anstasiia Butko, Gunther H Weber,
"Deep Learning Segmentation of Complex Features in Atomic-Resolution Phase Contrast Transmission Electron Microscopy Images",
Microscopy and Microanalysis,
2021,
doi: 10.1017/S1431927621000167
Jan-Tobias Sohns, Gunther H. Weber, Christoph Garth,
"Distributed Task-Parallel Topology-Controlled Volume Rendering",
Topological Methods in Data Analysis and Visualization VI: Theory, Algorithms, and Applications,
(Springer International Publishing:
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Pages: 55-69
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2020
Stefano Marchesini, Anuradha Trivedi, Pablo Enfedaque, Talita Perciano, Dilworth Parkinson,
"Sparse Matrix-Based HPC Tomography",
Computational Science -- ICCS 2020,
Cham,
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2020,
248--261,
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H. Childs, S. Ahern, J. Ahrens, A. C. Bauer, J. Bennett, E. W. Bethel, P.-… more authors »T. Bremer, E. Brugger, J. Cottam, M. Dorier, S. Dutta, J. Favre, T. Fogal, S. Frey, C. Garth, B. Geveci, W. F. Godoy, C. D. Hansen, C. Harrison, B. Hentschel, J. Insley, C. Johnson, S. Klasky, A. Knoll, J. Kress, M. Larsen, J. Lofstead, K.-L. Ma, P. Malakar, J. Meredith, K. Moreland, P. Navratil, P. O Leary, M. Parashar, V. Pascucci, J. Patchett, T. Peterka, S. Petruzza, N. Podhorszki, D. Pugmire, M. Rasquin, S. Rizzi, D. H. Rogers, S. Sane, F. Sauer, R. Sisneros, H.-W. Shen, W. Usher, R. Vickery, V. Vishwanath, I. Wald, R. Wang, G. H. Weber, B. Whitlock, M. Wolf, H. Yu, S. B. Ziegler, « fewer authors
"A Terminology for In Situ Visualization and Analysis Systems",
International Journal of High Performance Computing Applications,
2020,
34:676--691,
doi: 10.1177/1094342020935991
Petar Hristov, Gunther H. Weber, Hamish A. Carr, Oliver R\ ubel, James P. Ahrens,
"Data Parallel Hypersweeps for In Situ Topological Analysis",
Proceedings of the 10th IEEE Symposium on Large Data Analysis and Visualization (LDAV),
2020,
12--21,
doi: 10.1109/LDAV51489.2020.00008
Jonas Lukasczyk, Christoph Garth, Gunther H. Weber, Tim Biedert, Ross Maciejewski, Heike Leitte,
"Dynamic Nested Tracking Graphs",
IEEE Transactions on Visualization and Computer Graphics (Proceedings IEEE VIS 2019),
2020,
26:249--258,
doi: 10.1109/TVCG.2019.2934368
Sugeerth Murugesan, Kristofer Bouchard, Jesse Brown, Mariam Kiran, Dan… more authors » Lurie, Bernd Hamann, Gunther H. Weber, « fewer authors
"State-based Network Similarity Visualization",
Information Visualization,
2020,
19:96--113,
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Anna-Pia Lohfink, Florian Wetzels, Jonas Lukasczyk, Gunther H. Weber, Christoph Garth,
"Fuzzy Contour Trees: Alignment and Joint Layout of Multiple Contour Trees",
Computer Graphics Forum (Special Issue, Proceedings Eurographics/IEEE Symposium on Visualization),
2020,
39:343--355,
doi: 10.1111/cgf.13985
Hamish A. Carr, Julien Tierney, Gunther H. Weber,
"Pathological and Test Cases For Reeb Analysis",
Topological Methods in Data Analysis and Visualization V: Theory, Algorithms, and Applications",
(Springer International Publishing:
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H Chang, J J Donatelli, P Enfedaque, G Freychet, M Haranczyk, A Hexemer, Z… more authors » Hu, O Jain, H Krishnan, D Kumar, X Li, L Lin, M MacNeil, S Marchesini, X Mo, M Noack, K Pande, R Pandolfi, D Parkinson, D M Pelt, T Perciano, D A Shapiro, D Ushizima, C Yang, P H Zwart, J A Sethian, « fewer authors
"Building Mathematics, Algorithms, and Software for Experimental Facilities",
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Talita Perciano, Colleen Heinemann, David Camp, Brenton Lessley, E Wes Bethel,
"Shared-Memory Parallel Probabilistic Graphical Modeling Optimization: Comparison of Threads, OpenMP, and Data-Parallel Primitives",
High Performance Computing,
Cham,
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2019
Oliver Rübel, Andrew Tritt, Benjamin Dichter, Thomas Braun, Nicholas Cain,… more authors » Nathan Clack, Thomas J. Davidson, Max Dougherty, Jean-Christophe Fillion-Robin, Nile Graddis, Michael Grauer, Justin T. Kiggins, Lawrence Niu, Doruk Ozturk, William Schroeder, Ivan Soltesz, Friedrich T. Sommer, Karel Svoboda, Lydia Ng, Loren M. Frank, Kristofer Bouchard, « fewer authors
"NWB:N 2.0: An Accessible Data Standard for Neurophysiology",
bioRxiv,
January 17, 2019,
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2018
K. E. Bouchard, J.B. Aimone, M. Chun, T. Dean, M. Denker, M. Diesmann, D.… more authors » Donofrio, L.M. Frank, N. Kasthuri, C. Koch, O. Rübel, H. Simon, F. T. Sommer, Prabhat, « fewer authors
"International Neuroscience Initiatives Through the Lens of High-Performance Computing",
IEEE Computer,
April 12, 2018,
51(4):50-59,
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O. Rübel, B. P. Bowen,
"BASTet: Shareable and reproducible analysis and visualization of mass spectrometry imaging data via OpenMSI",
IEEE Transactions on Visualization and Computer Graphics,
January 12, 2018,
24,no. 1,
doi: 10.1109/TVCG.2017.2744479
B Loring, A Myers, D Camp, EW Bethel,
"Python-based in situ analysis and visualization",
Proceedings of the Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization - ISAV 18,
ACM Press,
2018,
doi: 10.1145/3281464.3281465
C Heinemann, T Perciano, D Ushizima, EW Bethel,
"Distributed memory parallel Markov random fields using graph partitioning",
Proceedings - 2017 IEEE International Conference on Big Data, Big Data 2017,
2018,
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Dáithí A Stone, Mark D Risser, Oliver M Angélil, Michael F Wehner, Shreyas… more authors » Cholia, Noel Keen, Harinarayan Krishnan, Travis A O Brien, William D Collins, « fewer authors
"A basis set for exploration of sensitivity to prescribed ocean conditions for estimating human contributions to extreme weather in CAM5. 1-1degree",
Weather and climate extremes,
2018,
19:10--19,
S Swaid, M Maat, H Krishnan, D Ghoshal, L Ramakrishnan,
"Usability heuristic evaluation of scientific data analysis and visualization tools",
Advances in Intelligent Systems and Computing,
2018,
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P Enfedaque, H Chang, H Krishnan, S Marchesini,
"GPU-based implementation of ptycho-ADMM for high performance x-ray imaging",
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics),
2018,
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RJ Pandolfi, DB Allan, E Arenholz, L Barroso-Luque, SI Campbell, TA… more authors » Caswell, A Blair, F De Carlo, S Fackler, AP Fournier, G Freychet, M Fukuto, D Gürsoy, Z Jiang, H Krishnan, D Kumar, RJ Kline, R Li, C Liman, S Marchesini, A Mehta, AT N Diaye, DY Parkinson, H Parks, LA Pellouchoud, T Perciano, F Ren, S Sahoo, J Strzalka, D Sunday, CJ Tassone, D Ushizima, S Venkatakrishnan, KG Yager, P Zwart, JA Sethian, A Hexemer, « fewer authors
"Xi-cam: a versatile interface for data visualization and analysis",
Journal of Synchrotron Radiation,
2018,
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C Li, C Michel, L Seland Graff, I Bethke, G Zappa, TJ Bracegirdle, E… more authors » Fischer, BJ Harvey, T Iversen, MP King, H Krishnan, L Lierhammer, D Mitchell, J Scinocca, H Shiogama, DA Stone, JJ Wettstein, « fewer authors
Midlatitude atmospheric circulation responses under 1.5 and 2.0g°C warming and implications for regional impacts,
Earth System Dynamics,
Pages: 359--382
2018,
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M Wehner, D Stone, D Mitchell, H Shiogama, E Fischer, LS Graff, VV Kharin,… more authors » L Lierhammer, B Sanderson, H Krishnan, « fewer authors
Changes in extremely hot days under stabilized 1.5 and 2.0 °c global warming scenarios as simulated by the HAPPI multi-model ensemble,
Earth System Dynamics,
Pages: 299--311
2018,
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MF Wehner, KA Reed, B Loring, D Stone, H Krishnan,
"Changes in tropical cyclones under stabilized 1.5 and 2.0°C global warming scenarios as simulated by the Community Atmospheric Model under the HAPPI protocols",
Earth System Dynamics,
2018,
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JJ Billings, AR Bennett, J Deyton, K Gammeltoft, J Graham, D Gorin, H… more authors » Krishnan, M Li, AJ McCaskey, T Patterson, R Smith, GR Watson, A Wojtowicz, « fewer authors
The eclipse integrated computational environment,
SoftwareX,
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M Wehner, D Stone, H Shiogama, P Wolski, A Ciavarella, N Christidis, H Krishnan,
Early 21st century anthropogenic changes in extremely hot days as simulated by the C20C+ detection and attribution multi-model ensemble,
Weather and Climate Extremes,
Pages: 1--8
2018,
doi: 10.1016/j.wace.2018.03.001
DA Stone, MD Risser, OM Angélil, MF Wehner, S Cholia, N Keen, H Krishnan,… more authors » TA O Brien, WD Collins, « fewer authors
A basis set for exploration of sensitivity to prescribed ocean conditions for estimating human contributions to extreme weather in CAM5.1-1degree,
Weather and Climate Extremes,
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2018,
doi: 10.1016/j.wace.2017.12.003
YS Yu, M Farmand, C Kim, Y Liu, CP Grey, FC Strobridge, T Tyliszczak, R… more authors » Celestre, P Denes, J Joseph, H Krishnan, FRNC Maia, ALD Kilcoyne, S Marchesini, TPC Leite, T Warwick, H Padmore, J Cabana, DA Shapiro, « fewer authors
Three-dimensional localization of nanoscale battery reactions using soft X-ray tomography,
Nature Communications,
2018,
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DA Shapiro, R Celestre, B Enders, J Joseph, H Krishnan, MA Marcus, K… more authors » Nowrouzi, H Padmore, J Park, A Warwick, Y-S Yu, « fewer authors
The COSMIC Imaging Beamline at the Advanced Light Source: a new facility for spectro-microscopy of nano-materials,
Microscopy and Microanalysis,
Pages: 8--11
2018,
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B Enders, K Nowrouzi, H Krishnan, S Marchesini, J Park, Y-S Yu, DA Shapiro,
Dataflow at the COSMIC Beamline - Stream Processing and Supercomputing,
Microscopy and Microanalysis,
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2018,
doi: 10.1017/s1431927618012710
GP Rodrigo, M Henderson, GH Weber, C Ophus, K Antypas, L Ramakrishnan,
"ScienceSearch: Enabling Search through Automatic Metadata Generation",
2018 IEEE 14th International Conference on e-Science (e-Science),
IEEE,
2018,
doi: 10.1109/escience.2018.00025
Tom Liebmann, Gunther H. Weber, Gerik Scheuermann,
"Hierarchical Correlation Clustering in Multiple 2D Scalar Fields",
Computer Graphics Forum (Special Issue, Proceedings Symposium on Visualization),
2018,
37,
doi: 10.1111/cgf.13396
K Beketayev, D Yeliussizov, D Morozov, GH Weber, B Hamann,
"Measuring the Error in Approximating the Sub-Level Set Topology of Sampled Scalar Data",
International Journal of Computational Geometry and Applications,
2018,
28:57--77,
doi: 10.1142/S0218195918500036
Gunther H. Weber, Colin Ophus, Lavanya Ramakrishnan,
"Automated Labeling of Electron Microscopy Images Using Deep Learning",
Proc. IEEE/ACM Machine Learning in HPC Environments (MLHPC),
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26--36,
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2017
Sugeerth Murugesan, Kristofer Bouchard, Edward Chang, Dougherty, Bernd… more authors » Hamann, Gunther H. Weber, « fewer authors
"Multi-scale Visual Analysis of Time-varying Electrocorticography Data Clustering of Brain Regions",
BMC Bioinformatics,
2017,
18:236,
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Jonas Lukasczyk, Ross Maciejewski, Gunther H. Weber, Garth, Heike Leitte,
"Nested Tracking Graphs",
Computer Graphics Forum (Special Issue, Proceedings Symposium on Visualization),
2017,
36 (3):12--22,
doi: 10.1111/cgf.13164
Gunther H. Weber, Sheelagh Carpendale, David Ebert, Brian Fisher Hans… more authors » Hagen, Ben Shneiderman, Anders Ynnerman, « fewer authors
"Apply or Die: On the Role and Assessment of Application Papers in",
IEEE Computer Graphics \& Applications,
2017,
37 (3):96--104,
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Stone, D. A., H. Krishnan, R. Lance, S. Sippel, and M. F. Wehner,
"The First and Second Hackathons of the International CLIVAR C20C+ Detection and Attribution Project",
CLIVAR Exchanges,
2017,
Timmermans, B., D. Stone, M. Wehner, and H. Krishnan,
"Impact of tropical cyclones on modeled wind-wave climate",
Geophysical Research Letters,
2017,
44:1393-1401,
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E. Wes Bethel,
In Situ Processing Overview and Relevance to the HPC Community,
SIAM Conference on Computational Science and Engineering, MS74: In Situ Methods and Infrastructures: Faster Insight Through Smarter Computing,
2017,
U Ayachit, B Whitlock, M Wolf, B Loring, B Geveci, D Lonie, EW Bethel,
"The SENSEI generic in situ interface",
Proceedings of ISAV 2016: 2nd Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization - Held in conjunction with SC 2016: The International Conference for High Performance Computing, Networking, Storage and Analysis,
2017,
40--44,
doi: 10.1109/ISAV.2016.13
B Lessley, T Perciano, M Mathai, H Childs, EW Bethel,
"Maximal clique enumeration with data-parallel primitives",
2017 IEEE 7th Symposium on Large Data Analysis and Visualization, LDAV 2017,
2017,
2017-Dec:16--25,
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T Perciano, D Ushizima, H Krishnan, D Parkinson, N Larson, DM Pelt, W… more authors » Bethel, F Zok, J Sethian, « fewer authors
"Insight into 3D micro-CT data: Exploring segmentation algorithms through performance metrics",
Journal of Synchrotron Radiation,
2017,
24:1065--1077,
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E Bethel,
zorder-lib: Library API for Z-Order Memory Layout:,
2017,
EW Bethel,
Towards a data-centric research and development roadmap for large-scale science user facilities,
Proceedings - 13th IEEE International Conference on eScience, eScience 2017,
Pages: 462--464
2017,
doi: 10.1109/eScience.2017.72
O Angélil, D Stone, M Wehner, CJ Paciorek, H Krishnan, W Collins,
"An independent assessment of anthropogenic attribution statements for recent extreme temperature and rainfall events",
Journal of Climate,
2017,
30:5--16,
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Benedikt J Daurer, Hari Krishnan, Talita Perciano, Filipe RNC Maia, David… more authors » A Shapiro, James A Sethian, Stefano Marchesini, « fewer authors
"Nanosurveyor: a framework for real-time data processing",
Advanced structural and chemical imaging,
2017,
3:7,
T Perciano, D Ushizima, H Krishnan, D Parkinson, J Sethian,
"FibriPy: A software environment for fiber analysis from 3D micro-computed tomography data",
Advanced Materials - TechConnect Briefs 2017,
2017,
1:25--28,
DY Parkinson, DM Pelt, T Perciano, D Ushizima, H Krishnan, HS Barnard, AA MacDowell, J Sethian,
"Machine learning for micro-tomography",
Proceedings of SPIE - The International Society for Optical Engineering,
2017,
10391,
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B Timmermans, D Stone, M Wehner, H Krishnan,
Impact of tropical cyclones on modeled extreme wind-wave climate,
Geophysical Research Letters,
Pages: 1393--1401
2017,
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BJ Daurer, H Krishnan, T Perciano, FRNC Maia, DA Shapiro, JA Sethian, S Marchesini,
Nanosurveyor: a framework for real-time data processing.,
Advanced structural and chemical imaging,
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2017,
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M Farmand, R Celestre, P Denes, ALD Kilcoyne, S Marchesini, H Padmore, T… more authors » Tyliszczak, T Warwick, X Shi, J Lee, YS Yu, J Cabana, J Joseph, H Krishnan, T Perciano, FRNC Maia, DA Shapiro, « fewer authors
"Near-edge X-ray refraction fine structure microscopy",
Applied Physics Letters,
2017,
110,
doi: 10.1063/1.4975377
P Oesterling, C Heine, GH Weber, D Morozov, G Scheuermann,
"Computing and visualizing time-varying merge trees for high-dimensional data",
Mathematics and Visualization,
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Pages: 87--101
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GH Weber, MS Bandstra, DH Chivers, HH Elgammal, V Hendrix, J Kua, JS Maltz,… more authors » K Muriki, Y Ong, K Song, MJ Quinlan, L Ramakrishnan, BJ Quiter, « fewer authors
"Web-based visual data exploration for improved radiological source detection",
Concurrency Computation,
2017,
29,
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2016
Andrew C. Bauer, Kenneth E. Jansen, E. Wes Bethel, Utkarsh Ayachit, Michel… more authors » Rasquin, Benjamin Matthews, Steve Jordan, « fewer authors
"In Situ Analysis and Visualization at Scale with PHASTA and ParaView Catalyst on Mira and Theta",
SC16 Scientific Visualization Showcase,
2016,
E. Wes Bethel, Martin Greenwald, Kerstin Kleese Dam, Manish Parashar,… more authors » Stefan M. Wild, H. Steven Wiley, « fewer authors
"2016 IEEE 12th International Conference on e-Science",
2016 IEEE 12th International Conference on e-Science,
Baltimore, MD, USA,
2016,
213--222,
Hoa Nguyen, D\ aith\ i Stone, E. Wes Bethel,
"Statistical Projections for Multi-dimensional Visual Data Exploration",
6th IEEE Symposium on Large Data Analysis and Visualization,
2016,
moderator E. Wes Bethel (organizer, Hank Childs, Ken Moreland, Dave… more authors » Pugmire, Matt Larsen, Matthieu Dorier, « fewer authors
In Situ Efforts and Challenges in Large Data Analysis and Visualization,
IEEE Symposium on Large Data Analysis and Visualization (LDAV),
2016,
Md. Mostofa Ali Patwary, Nadathur Rajagopalan Satish, Narayanan Sundaram,… more authors » Jialin Liu, Peter Sadowski, Evan Racah, Suren Byna, Craig Tull, Wahid Bhimji, Prabhat, and Pradeep Dubey,, « fewer authors
"PANDA: Extreme Scale Parallel K-Nearest Neighbor on Distributed Architectures",
30th IEEE International Parallel & Distributed Processing Symposium (IPDPS) 2016, Chicago,
May 23, 2016,
Wahid Bhimji, Debbie Bard, Melissa Romanus, David Paul, Andrey Ovsyannikov,… more authors » Brian Friesen, Matt Bryson, Joaquin Correa, Glenn K. Lockwood, Vakho Tsulaia, Suren Byna, Steve Farrell, Doga Gursoy, Chris Daley, Vince Beckner, Brian Van Straalen, Nicholas Wright, Katie Antypas, Prabhat,, « fewer authors
"Accelerating Science with the NERSC Burst Buffer Early User Program",
Cray User Group (CUG) 2016,
May 10, 2016,
T Perciano, DM Ushizima, EW Bethel, YD Mizrahi, D Parkinson, JA Sethian,
"Reduced-complexity image segmentation under parallel Markov Random Field formulation using graph partitioning",
Proceedings - International Conference on Image Processing, ICIP,
2016,
2016-Aug:1259--1263,
doi: 10.1109/ICIP.2016.7532560
Utkarsh Ayachit, Andrew Bauer, Earl PN Duque, Greg Eisenhauer, Nicola… more authors » Ferrier, Junmin Gu, Kenneth E Jansen, Burlen Loring, Zarija Lukic, Suresh Menon, others, « fewer authors
"Performance analysis, design considerations, and applications of extreme-scale in situ infrastructures",
SC 16: Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis,
2016,
921--932,
LBNL 1007264,
O Rübel, B Loring, JL Vay, DP Grote, R Lehe, S Bulanov, H Vincenti, EW Bethel,
"WarpIV: In Situ Visualization and Analysis of Ion Accelerator Simulations",
IEEE Computer Graphics and Applications,
2016,
36:22--35,
doi: 10.1109/MCG.2016.62
DM Ushizima, HA Bale, EW Bethel, P Ercius, BA Helms, H Krishnan, LT… more authors » Grinberg, M Haranczyk, AA Macdowell, K Odziomek, DY Parkinson, T Perciano, RO Ritchie, C Yang, « fewer authors
"IDEAL: Images Across Domains, Experiments, Algorithms and Learning",
JOM,
2016,
68:2963--2972,
doi: 10.1007/s11837-016-2098-4
SV Venkatakrishnan, KA Mohan, K Beattie, J Correa, E Dart, JR Deslippe, A… more authors » Hexemer, H Krishnan, AA MacDowell, S Marchesini, SJ Patton, T Perciano, JA Sethian, R Stromsness, BL Tierney, CE Tull, D Ushizima, DY Parkinson, « fewer authors
"Making advanced scientific algorithms and big scientific data management more accessible",
IS and T International Symposium on Electronic Imaging Science and Technology,
2016,
doi: 10.2352/ISSN.2470-1173.2016.19.COIMG-155
DY Parkinson, K Beattie, X Chen, J Correa, E Dart, BJ Daurer, JR Deslippe,… more authors » A Hexemer, H Krishnan, AA Macdowell, FRNC Maia, S Marchesini, HA Padmore, SJ Patton, T Perciano, JA Sethian, D Shapiro, R Stromsness, N Tamura, BL Tierney, CE Tull, D Ushizima, « fewer authors
"Real-time data-intensive computing",
AIP Conference Proceedings,
2016,
1741,
doi: 10.1063/1.4952921
S Marchesini, H Krishnan, BJ Daurer, DA Shapiro, T Perciano, JA Sethian, FRNC Maia,
"SHARP: A distributed GPU-based ptychographic solver",
Journal of Applied Crystallography,
2016,
49:1245--1252,
doi: 10.1107/S1600576716008074
M Wehner, D Stone, H Krishnan, K Achutarao, F Castillo,
16. The deadly combination of heat and humidity in India and Pakistan in summer 2015,
Bulletin of the American Meteorological Society,
Pages: S81--S86
2016,
doi: 10.1175/BAMS-D-16-0145.1
TA O Brien, WD Collins, K Kashinath, O Rübel, S Byna, J Gu, H Krishnan, PA Ullrich,
Resolution dependence of precipitation statistical fidelity in hindcast simulations,
Journal of Advances in Modeling Earth Systems,
Pages: 976--990
2016,
doi: 10.1002/2016MS000671
Deborah A Agarwal, Boris Faybishenko, Vicky L Freedman, Harinarayan… more authors » Krishnan, Gary Kushner, Carina Lansing, Ellen Porter, Alexandru Romosan, Arie Shoshani, Haruko Wainwright, others, « fewer authors
"A science data gateway for environmental management",
Concurrency and Computation: Practice and Experience,
2016,
28:1994--2004,
M Alegro, E Amaro, B Loring, H Heinsen, E Alho, L Zollei, D Ushizima, LT Grinberg,
"Multimodal Whole Brain Registration: MRI and High Resolution Histology",
IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops,
2016,
634--642,
doi: 10.1109/CVPRW.2016.85
Andrey Ovsyannikov, Melissa Romanus, Brian Van Straalen, Gunther H. Weber, David Trebotich,
"Scientific Workflows at DataWarp-Speed: Accelerated Data-Intensive Science using NERSC s Burst Buffer",
Proceedings of the 1st Joint International Workshop on Parallel Data Storage & Data Intensive Scalable Computing Systems,
IEEE Press,
2016,
1--6,
doi: 10.1109/PDSW-DISCS.2016.005
Hamish A. Carr, Gunther H. Weber, Christopher M. Sewell, James P. Ahrens,
"Parallel Peak Pruning for Scalable SMP Contour Tree Computation",
Proceedings of the 6th IEEE Symposium on Large Data Analysis and Visualization (LDAV),
2016,
75--84,
doi: 10.1109/LDAV.2016.7874312
Sugeerth Murugesan, Kristofer Bouchard, Edward Chang, Dougherty, Bernd… more authors » Hamann, Gunther H. Weber, « fewer authors
"Hierarchical Spatio-temporal Visual Analysis of Cluster Evolution in Data",
Proceedings of the 7th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics,
New York, NY, USA,
ACM,
2016,
630--639,
doi: 10.1145/2975167.2985688
T Perciano, F Tupin, R Hirata, RM Cesar,
"A two-level Markov random field for road network extraction and its application with optical, SAR, and multitemporal data",
International Journal of Remote Sensing,
2016,
37:3584--3610,
doi: 10.1080/01431161.2016.1201227
2015
Stone, D., H. Shiogama, P. Wolski, O. Angélil, S. Cholias, N. Christidis,… more authors » A. Dittus, C. Folland, A. King, J. Kinter, H. Krishnan, S.-K. Min, M. Wehner, « fewer authors
"The C20C+ Detection and Attribution Project",
Fall Meeting of the American Geophysical Union,
2015,
Md. Mostofa Ali Patwary, Suren Byna, Nadathur Rajagopalan Satish,… more authors » Narayanan Sundaram, Zarija Lukic, Vadim Roytershteyn, Michael J. Anderson, Yushu Yao, Mr Prabhat, and Pradeep Dubey, « fewer authors
"BD-CATS: Big Data Clustering at Trillion Particle Scale",
Supercomputing 2015 (SC15),
Supercomputing 2015 (SC15),
November 17, 2015,
Babak Behzad, Suren Byna, Prabhat and Marc Snir,
"Pattern-driven Parallel I/O Tuning",
10th Parallel Data Storage Workshop (PDSW) 2015, held in conjunction with SC15,
10th Parallel Data Storage Workshop (PDSW) 2015, to be held in conjunction with SC15,
November 16, 2015,
Shane Snyder, Philip Carns, Robert Latham, Misbah Mubarak, Chris Carothers,… more authors » Babak Behzad, Huong Vu Thanh Luu, Suren Byna, and Prabhat, « fewer authors
"Techniques for Modeling Large-scale HPC I/O Workloads",
the 6th International Workshop on Performance Modeling, Benchmarking and Simulation of High Performance Computer Systems (PMBS15), in conjunction with SC15,
the 6th International Workshop on Performance Modeling, Benchmarking and Simulation of High Performa,
November 15, 2015,
Babak Behzad, Suren Byna, Stefan Wild, Prabhat and Marc Snir,
"Dynamic Model-driven Parallel I/O Performance Tuning",
IEEE Cluster 2015,
2015,
H. Luu, M. Winslett, W. Gropp, R. Ross, P. Carns, K. Harms, Prabhat, S. Byna, Y. Yao,,
"A Multi-platform Study of I/O Behavior on Petascale Supercomputers",
The 24th ACM International Symposium on High-Performance Parallel and Distributed Computing (HPDC) 2015,
2015,
"Machine learning and understanding for intelligent extreme scale scientific computing and discovery",
DOE ASCR Machine Learning Workshop Report,
January 2015,
doi: 10.2172/1471083
J Donatelli, M Haranczyk, A Hexemer, H Krishnan, X Li, L Lin, F Maia, S… more authors » Marchesini, D Parkinson, T Perciano, D Shapiro, D Ushizima, C Yang, JA Sethian, « fewer authors
"CAMERA: The Center for Advanced Mathematics for Energy Research Applications",
Synchrotron Radiation News,
2015,
28:4--9,
doi: 10.1080/08940886.2015.1013413
Y Li, S Meyer, J Lim, SC Lee, WE Gent, S Marchesini, H Krishnan, T… more authors » Tyliszczak, D Shapiro, ALD Kilcoyne, WC Chueh, « fewer authors
Effects of Particle Size, Electronic Connectivity, and Incoherent Nanoscale Domains on the Sequence of Lithiation in LiFePO<inf>4</inf> Porous Electrodes,
Advanced Materials,
Pages: 6591--6597
2015,
doi: 10.1002/adma.201502276
Yiyang Li, Sophie Meyer, Jongwoo Lim, Sang Chul Lee, William E Gent,… more authors » Stefano Marchesini, Harinarayan Krishnan, Tolek Tyliszczak, David Shapiro, Arthur L David Kilcoyne, others, « fewer authors
Effects of Particle Size, Electronic Connectivity, and Incoherent Nanoscale Domains on the Sequence of Lithiation in LiFePO4 Porous Electrodes,
Advanced Materials,
Pages: 6591--6597
2015,
Yiyang Li, Sophie Meyer, Jongwoo Lim, Sang Chul Lee, William E Gent,… more authors » Stefano Marchesini, Harinarayan Krishnan, Tolek Tyliszczak, David Shapiro, Arthur L David Kilcoyne, others, « fewer authors
Electrode Lithiation: Effects of Particle Size, Electronic Connectivity, and Incoherent Nanoscale Domains on the Sequence of Lithiation in LiFePO4 Porous Electrodes (Adv. Mater. 42/2015),
Advanced Materials,
Pages: 6590--6590
2015,
AW Wills, DJ Michalak, P Ercius, ER Rosenberg, T Perciano, D Ushizima, R Runser, BA Helms,
"Block Copolymer Packing Limits and Interfacial Reconfigurability in the Assembly of Periodic Mesoporous Organosilicas",
Advanced Functional Materials,
2015,
25:4120--4128,
doi: 10.1002/adfm.201501059
D Ushizima, T Perciano, D Parkinson,
"Fast detection of material deformation through structural dissimilarity",
Proceedings - 2015 IEEE International Conference on Big Data, IEEE Big Data 2015,
2015,
2775--2781,
doi: 10.1109/BigData.2015.7364080
2014
Babak Behzad, Surendra Byna, Stefan M. Wild, Mr. Prabhat, Marc Snir,
"Improving Parallel I/O Autotuning with Performance Modeling",
ACM Symposium on High-Performance Parallel and Distributed Computing (HPDC 2014),
New York, NY, USA,
ACM,
2014,
253--256,
doi: 10.1145/2600212.2600708
Gunther H. Weber, Hans Johansen, Daniel T. Graves, Terry J. Ligocki,
"Simulating Urban Environments for Energy Analysis",
Proceedings Visualization in Environmental Sciences (EnvirVis),
2014,
LBNL 6652E,
Dáithí Stone, Michael Wehner, Shreyas Cholia, Harinarayan Krishnan, Piotr… more authors » Wolski, Mark Tadross, Chris Folland, Nikos Christidis, Hideo Shiogama, « fewer authors
"The C20C+ Detection and Attribution Project",
Integrated Climate Modeling Principal Investigator Meeting 2014,
2014,
D Ushizima, T Perciano, H Krishnan, B Loring, H Bale, D Parkinson, J Sethian,
"Structure recognition from high resolution images of ceramic composites",
Proceedings - 2014 IEEE International Conference on Big Data, IEEE Big Data 2014,
2014,
683--691,
doi: 10.1109/BigData.2014.7004292
H Karimabadi, V Roytershteyn, HX Vu, YA Omelchenko, J Scudder, W Daughton,… more authors » A Dimmock, K Nykyri, M Wan, D Sibeck, M Tatineni, A Majumdar, B Loring, B Geveci, « fewer authors
"The link between shocks, turbulence, and magnetic reconnection in collisionless plasmas",
Physics of Plasmas,
2014,
21,
doi: 10.1063/1.4882875
W Daughton, TKM Nakamura, H Karimabadi, V Roytershteyn, B Loring,
"Computing the reconnection rate in turbulent kinetic layers by using electron mixing to identify topology",
Physics of Plasmas,
2014,
21,
doi: 10.1063/1.4875730
Gunther H. Weber, Helwig Hauser,
"Interactive Visual Exploration and Analysis",
Mathematics and Visualization,
(Springer-Verlag:
2014)
Pages: 161--174,
LBNL 6655E,
Patrick Oesterling, Christian Heine, Gunther H. Weber, Gerik Scheuermann,
"A Topology-Based Approach to Visualize the Thematic Composition of Document Collections",
Theory and Applications of Natural Language Processing,
(Springer International Publishing:
2014)
Pages: 63-85
doi: 10.1007/978-3-319-12655-5_4
K Beketayev, D Yeliussizov, D Morozov, GH Weber, B Hamann,
"Measuring the distance between merge trees",
Mathematics and Visualization,
(
2014)
Pages: 151--165
doi: 10.1007/978-3-319-04099-8_10
2013
Babak Behzad, Huong Vu Thanh Luu, Joseph Huchette, Surendra Byna, Prabhat,… more authors » Ruth Aydt, Quincey Koziol, and Marc Snir, « fewer authors
"Taming parallel I/O complexity with auto-tuning",
In Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis (SC '13),
2013,
David Camp, Hari Krishnan, David Pugmire, Christoph Garth, Ian Johnson, E.… more authors » Wes Bethel, Kenneth I. Joy, and Hank Childs., « fewer authors
"GPU Acceleration of Particle Advection Workloads in a Parallel, Distributed Memory Setting",
Proceedings of Eurographics Symposium on Parallel Graphics and Visualization (EGPGV),
May 5, 2013,
Hank Childs, Berk Geveci, William J. Schroeder, Jeremy S. Meredith,… more authors » Kenneth Moreland, Christopher Sewell, Torsten Kuhlen, E.Wes Bethel, « fewer authors
"Research Challenges for Visualization Software",
IEEE Computer,
May 1, 2013,
46:34-43,
LBNL 6239E,
E Wes Bethel, Prabhat Prabhat, Suren Byna, Oliver R\ ubel, K John Wu, Michael Wehner,
"Why high performance visual data analytics is both relevant and difficult",
Visualization and Data Analysis 2013,
January 2013,
8654:86540B,
LBNL LBNL-6063E,
Kesheng Wu, E Bethel, Ming Gu, David Leinweber, Oliver R\ ubel,
"A big data approach to analyzing market volatility",
Algorithmic Finance,
2013,
2:241--267,
LBNL LBNL-6382E,
Show Details
Understanding the microstructure of the financial market requires the processing of a vast amount of data related to individual trades, and sometimes even multiple levels of quotes. Analyzing such a large volume of data requires tremendous computing power that is not easily available to financial academics and regulators. Fortunately, public funded High Performance Computing (HPC) power is widely available at the National Laboratories in the US. In this paper we demonstrate that the HPC resource and the techniques for data-intensive sciences can be used to greatly accelerate the computation of an early warning indicator called Volume-synchronized Probability of Informed trading (VPIN). The test data used in this study contains five and a half year's worth of trading data for about 100 most liquid futures contracts, includes about 3 billion trades, and takes 140GB as text files. By using (1) a more efficient file format for storing the trading records, (2) more effective data structures and algorithms, and (3) parallelizing the computations, we are able to explore 16,000 different ways of computing VPIN in less than 20 hours on a 32-core IBM DataPlex machine. Our test demonstrates that a modest computer is sufficient to monitor a vast number of trading activities in real-time -- an ability that could be valuable to regulators.
Our test results also confirm that VPIN is a strong predictor of liquidity-induced volatility. With appropriate parameter choices, the false positive rates are about 7% averaged over all the futures contracts in the test data set. More specifically, when VPIN values rise above a threshold (CDF > 0.99), the volatility in the subsequent time windows is higher than the average in 93% of the cases.
Kesheng Wu, Wes Bethel, Ming Gu, David, Oliver R\ ubel,
Testing VPIN on Big Data,
Available at SSRN 2318259,
2013,
O Rübel, A Greiner, S Cholia, K Louie, EW Bethel, TR Northen, BP Bowen,
"OpenMSI: A high-performance web-based platform for mass spectrometry imaging",
Analytical Chemistry,
2013,
85:10354--103,
doi: 10.1021/ac402540a
E Wes Bethel, Prabhat Prabhat, Suren Byna, R\ ubel, K John Wu, Michael Wehner,
Why high performance visual data analytics is both and difficult,
IS\&T/SPIE Electronic Imaging,
Pages: 86540B-865
2013,
doi: 10.1117/12.2010980
DN Williams, T Bremer, C Doutriaux, J Patchett, S Williams, G Shipman, R… more authors » Miller, DR Pugmire, B Smith, C Steed, EW Bethel, H Childs, H Krishnan, P Prabhat, M Wehner, CT Silva, E Santos, D Koop, T Ellqvist, J Poco, B Geveci, A Chaudhary, A Bauer, A Pletzer, D Kindig, GL Potter, TP Maxwell, « fewer authors
Ultrascale visualization of climate data,
Computer,
Pages: 68--76
2013,
doi: 10.1109/MC.2013.119
H Karimabadi, B Loring, P O leary, A Majumdar, M Tatineni, B Geveci,
"In-situ visualization for global hybrid simulations",
ACM International Conference Proceeding Series,
2013,
doi: 10.1145/2484762.2484822
H Karimabadi, V Roytershteyn, M Wan, WH Matthaeus, W Daughton, P Wu, M… more authors » Shay, B Loring, J Borovsky, E Leonardis, SC Chapman, TKM Nakamura, « fewer authors
"Coherent structures, intermittent turbulence, and dissipation in high-temperature plasmas",
Physics of Plasmas,
2013,
20,
doi: 10.1063/1.4773205
Gunther H. Weber, Hank Childs, Jeremy S. Meredith,
"Recent Advances in VisIt: Parallel Crack-free Isosurface Extraction",
Numerical Modeling of Space Plasma Flows: Astronum-2012 (Astronomical Society of the Pacific Conference Series),
2013,
T Perciano, MW Urban, NDA Mascarenhas, M Fatemi, AC Frery, GT Silva,
"Deconvolution of vibroacoustic images using a simulation model based on a three dimensional point spread function",
Ultrasonics,
2013,
53:36--44,
doi: 10.1016/j.ultras.2012.03.011
2012
Cyrus Harrison, Paul Navratil, Maysam Mossalem, Ming Jiang, Hank Childs,
"Efficient Dynamic Derived Field Generation on Many-Core Architectures Using Python",
Workshop on Python for High Performance and Scientific Computing (PyHPC 2012), held in conjunction with the ACM/IEEE Conference on SuperComputing (SC12),
November 2012,
11-20,
E. Wes Bethel and Mark Howison,
"Multi-core and Many-core Shared-memory Parallel Raycasting Volume Rendering Optimization and Tuning",
International Journal of High Performance Computing Applications,
2012,
LBNL 5362E,
Hank Childs, Eric Brugger, Brad Whitlock, Jeremy Meredith, Sean Ahern,… more authors » David Pugmire, Kathleen Biagas, Mark Miller, Cyrus Harrison, Gunther H. Weber, Hari Krishnan, Thomas Fogal, Allen Sanderson, Christoph Garth, E. Wes Bethel, David Camp, Oliver Rubel, Marc Durant, Jean M. Favre, Paul Navratil, « fewer authors
"VisIt: An End-User Tool For Visualizing and Analyzing Very Large Data",
High Performance Visualization---Enabling Extreme-Scale Scientific Insight,
(
October 2012)
Pages: 357--372
E. Wes Bethel, David Camp, Hank Childs, Christoph Garth, Mark Howison,… more authors » Kenneth I. Joy, David Pugmire, « fewer authors
"Hybrid Parallelism",
High Performance Visualization---Enabling Extreme-Scale Scientific Insight,
(
October 2012)
Pages: 261--290
Hank Childs, David Pugmire, Sean Ahern, Brad Whitlock, Mark Howison,… more authors » Prabhat, Gunther Weber, E. Wes Bethel, « fewer authors
"Visualization at Extreme Scale Concurrency",
High Performance Visualization---Enabling Extreme-Scale Scientific Insight,
(
October 2012)
Pages: 291--306
Hank Childs,
"Parallel Visualization Frameworks",
High Performance Visualization---Enabling Extreme-Scale Scientific Insight,
(
October 2012)
Pages: 9--24
Hank Childs, Kwan-Liu Ma, Hongfeng Yu, Brad Whitlock, Jeremy Meredith,… more authors » Jean Favre, Scott Klasky, Norbert Podhorszki, Karsten Schwan, Matthew Wolf, Manish Parashar, Fan Zhang, « fewer authors
"In Situ Processing",
High Performance Visualization---Enabling Extreme-Scale Scientific Insight,
(
October 2012)
Pages: 171--198
E. Wes Bethel, Hank Childs, Charles Hansen (editors),
High Performance Visualization---Enabling Extreme-Scale Scientific Insight,
Chapman & Hall, CRC Computational Science,
(CRC Press/Francis--Taylor Group: October 2012)
Oliver Rübel, Cameron, G. R. Geddes, Min Chen, Estelle Cormier-Michel, and E. Wes Bethel,
"Query-driven Analysis of Plasma-based Particel Acceleration Data",
Poster Abstracts of IEEE VisWeek,
October 2012,
David Camp, Hank Childs, Christoph Garth, David Pugmire, Kenneth I. Joy,
"Parallel Stream Surface Computation for Large Data Sets",
Proceedings of IEEE Symposium on Large Data Analysis and Visualization (LDAV),
October 2012,
39--47,
LBNL 5776E,
Gunther H. Weber, Hank Childs, Jeremy S. Meredith,
"Efficient Parallel Extraction of Crack-free Isosurfaces from Adaptive Mesh Refinement (AMR) Data",
Proceedings of IEEE Symposium on Large Data Analysis and Visualization (LDAV),
October 2012,
31--38,
LBNL 5799E,
Paul Navratil, Bill Barth, Hank Childs,
"Virtual Rheoscopic Fluids for Dense, Large-Scale Fluid Flow Visualizations",
Proceedings of IEEE Symposium on Large Data Analysis and Visualization (LDAV),
October 2012,
79--84,
Tamay M. Ozgokmen, Andrew C. Poje, Paul F. Fischer, Hank Childs,… more authors » Harinarayan Krishnan, Christoph Garth, Angelique C. Haza, Edward Ryan, « fewer authors
"On multi-scale dispersion under the influence of surface mixed layer instabilities",
Ocean Modelling,
October 2012,
56:16-30,
Kelly P. Gaither, Hank Childs, Karl Schulz, Cyrus Harrison, Bill Barth,… more authors » Diego Donzis, P.K. Yeung, « fewer authors
"Using Visualization and Data Analysis to Understand Critical Structures in Massive Time Varying Turbulent Flow Simulations",
IEEE Computer Graphics and Applications,
July 2012,
32:34-45,
LBNL 5911E,
Mehmet Balman, Eric Pouyoul, Yushu Yao, E. Wes Bethel, Burlen Loring,… more authors » Prabhat, John Shalf, Alex Sim, and Brian L. Tierney, « fewer authors
"Experiences with 100G Network Applications",
In Proceedings of the Fifth international Workshop on Data-intensive Distributed Computing, in conjunction with ACM High Performance Distributing Computing (HPDC) Conference, 2012,
Delft, Netherlands,
June 2012,
LBNL 5603E,
doi: 10.1145/2286996.2287004
Show Details
100Gbps networking has finally arrived, and many research and educational in- stitutions have begun to deploy 100Gbps routers and services. ESnet and Internet2 worked together to make 100Gbps networks available to researchers at the Super- computing 2011 conference in Seattle Washington. In this paper, we describe two of the first applications to take advantage of this network. We demonstrate a visu- alization application that enables remotely located scientists to gain insights from large datasets. We also demonstrate climate data movement and analysis over the 100Gbps network. We describe a number of application design issues and host tuning strategies necessary for enabling applications to scale to 100Gbps rates.
Hank Childs, Torsten Kuhlen, Fabio Marton (editors),
Proceedings of the EuroGraphics Symposium on Parallel Graphics and Visualization (EGPGV),
EuroGraphics Association,
(EuroGraphics Association: May 2012)
Paul Navratil, Donald Fussell, Calvin Lin, Hank Childs,
"Dynamic Scheduling for Large-Scale Distributed-Memory Ray Tracing",
Proceedings of EuroGraphics Symposium on Parallel Graphics and Visualization (EGPGV),
May 2012,
61-70,
LBNL 5930E,
E. Wes Bethel, David Camp, Hank Childs, Mark Howison, Hari Krishnan,… more authors » Burlen Loring, Joerg Meyer, Prabhat, Oliver Ruebel, Daniela Ushizima, Gunther Weber, « fewer authors
"Towards Exascale: High Performance Visualization and Analytics – Project Status Report. Technical Report",
DOE Exascale Research Conference,
April 2012,
Gunther H. Weber, Kenes Beketayev, Peer-Timo Bremer, Bernd Hamann, Maciej… more authors » Haranczyk, Mario Hlawitschka, Valerio Pascucci, « fewer authors
"Comprehensible Presentation of Topological Information",
Status report for DOE Exascale Research Conference,
April 2012,
LBNL 5693E,
Gunther H. Weber, Dmitriy Morozov, Kenes Beketayev, John Bell, Peer-Timo… more authors » Bremer, Marc Day, Bernd Hamann, Christian Heine, Maciej Haranczyk, Mario Hlawitschka, Valerio Pascucci, Patrick Oesterling, Gerik Scheuermann, « fewer authors
"Topology-based Visualization and Analysis of High-dimensional Data and Time-varying Data at the Extreme Scale",
DOE Exascale Research Conference,
April 2012,
Gunther H. Weber, Peer-Timo Bremer,
"In-situ Analysis: Challenges and Opportunities",
Position paper for DOE Exascale Research Conference,
April 2012,
LBNL 5692E,
Show Details
We have developed a high-throughput graphics processing unit (GPU) code that can characterize a large database of crystalline porous materials. In our algorithm, the GPU is utilized to accelerate energy grid calculations, where the grid values represent interactions (i.e., Lennard-Jones + Coulomb potentials) between gas molecules (i.e., CH4 and CO2) and materials’ framework atoms. Using a parallel flood fill central processing unit (CPU) algorithm, inaccessible regions inside the framework structures are identified and blocked, based on their energy profiles. Finally, we compute the Henry coefficients and heats of adsorption through statistical Widom insertion Monte Carlo moves in the domain restricted to the accessible space. The code offers significant speedup over a single core CPU code and allows us to characterize a set of porous materials at least an order of magnitude larger than those considered in earlier studies. For structures selected from such a prescreening algorithm, full adsorption isotherms can be calculated by conducting multiple Grand Canonical Monte Carlo (GCMC) simulations concurrently within the GPU.
Soile V.E. Keränen, Oliver Rübel, David W. Knowles and Mark D. Biggin,
"Computational modeling of cis-regulatory modules from 3D exprression data in Drosophila blastoderm atlas",
Drosophila Genetics,
March 2012,
Ushizima, D.M., Weber, G., Morozov, D., Bethel, W., Sethian, J.A.,
"Algorithms for Microstructure Description applied to Microtomography",
Carbon Cycle 2.0 Symposium,
February 10, 2012,
Show Details
Developing computational tools that enable discovery of new materials for energy-related applications is a challenge. Crystalline porous materials are a promising class of materials that can be used for oil refinement, hydrogen or methane storage as well as carbon dioxide capture. Selecting optimal materials for these important applications requires analysis and screening of millions of potential candidates. Recently, we proposed an automatic approach based on the Fast Marching Method (FMM) for performing analysis of void space inside materials, a critical step preceding expensive molecular dynamics simulations. This breakthrough enables unsupervised, high-throughput characterization of large material databases. The algorithm has three steps: (1) calculation of the cost-grid which represents the structure and encodes the occupiable positions within the void space; (2) using FMM to segment out patches of the void space in the grid of (1), and find how they are connected to form either periodic channels or inaccessible pockets; and (3) generating blocking spheres that encapsulate the discovered inaccessible pockets and are used in proceeding molecular simulations. In this work, we expand upon our original approach through (A) replacement of the FMM-based approach with a more computationally efficient flood fill algorithm; and (B) parallelization of all steps in the algorithm, including a GPU implementation of the most computationally expensive step, the cost-grid generation. We report the acceleration achievable in each step and in the complete application, and discuss the implications for high-throughput material screening.
Surendra Byna, Jerry Chou, Oliver Rubel, Homa Karimabadi, William S… more authors » Daughter, Vadim Roytershteyn, E Wes Bethel, Mark Howison, Ke-Jou Hsu, Kuan-Wu Lin, others, « fewer authors
"Parallel I/O, analysis, and visualization of a trillion particle simulation",
SC 12: Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis,
January 2012,
1--12,
E. Wes Bethel,
"Exploration of Optimization Options for Increasing Performance of a GPU Implementation of a Three-dimensional Bilateral Filter",
2012,
LBNL 5406E,
E. W. Bethel and D. Leinweber and O. Rubel and K. Wu,
"Federal Market Information Technology in the Post Flash Crash Era: Roles of Supercomputing",
The Journal of Trading,
2012,
7:9-24,
LBNL 5263E,
doi: 10.3905/jot.2012.7.2.009
Oliver R\ ubel, Surendra Byna, Kesheng Wu, Fuyu Li, Michael Wehner, Wes Bethel, others,
"Teca: A parallel toolkit for extreme climate analysis",
Procedia Computer Science,
Elsevier,
January 2012,
9:866--876,
LBNL 5352E,
Show Details
We present TECA, a parallel toolkit for detecting extreme events in large climate datasets. Modern climate datasets expose parallelism across a number of dimensions: spatial locations, timesteps and ensemble members. We design TECA to exploit these modes of parallelism and demonstrate a prototype implementation for detecting and tracking three classes of extreme events: tropical cyclones, extra-tropical cyclones and atmospheric rivers. We process a modern TB-sized CAM5 simulation dataset with TECA, and demonstrate good runtime performance for the three case studies.
O. Rübel, S.V.E. Keränen, M.D. Biggin, D.W. Knowles, G.H. Weber, H. Hagen,… more authors » B. Hamann, and E.W. Bethel, « fewer authors
"Linking Advanced Visualization and MATLAB for the Analysis of 3D Gene Expression Data",
Mathematics and Visualization, Visualization in Medicine and Life Sciences II, Progress and New Challenges,
edited by L. Linsen and B. Hamann and H. Hagen and H.-C. Hege,
(Springer Verlag:
2012)
Pages: 267-285,
LBNL 4891E,
Mark Howison, E. Wes Bethel, Hank Childs,
"Hybrid Parallelism for Volume Rendering on Large, Multi- and Many-core Systems",
IEEE Transactions on Visualization and Computer Graphics,
January 2012,
18:17-29,
LBNL 4370E,
E. W. Bethel, Surendra Byna, Jerry Chou, Cormier-Michel, Cameron G. R.… more authors » Geddes, Howison, Fuyu Li, Prabhat, Ji Qiang, R\ ubel, Rob D. Ryne, Michael Wehner, Wu, « fewer authors
"Big Data Analysis and Visualization: What Do LINACS Tropical Storms Have In Common?",
11th International Computational Accelerator Physics ICAP 2012, Germany,
2012,
EW Bethel, S. Byna, J. Chou, E., CGR Geddes, M. Howison, F. Li J. Q.… more authors » Prabhat, O. R\ ubel, RD Ryne and, « fewer authors
Big Data Analysis and Visualization: What Do LINACS Tropical Storms Have In Common?,
11th International Computational Accelerator Physics ICAP 2012,
2012,
E. Wes Bethel, David Leinweber, Oliver Rübel Kesheng Wu,
Federal Market Information Technology in the Crash Era: Roles for Supercomputing,
The Journal of Trading,
Pages: 9--25
2012,
doi: 10.3905/jot.2012.7.2.009
Surendra Byna, Jerry Chou, Oliver R\ ubel, , Homa Karimabadi, William S.… more authors » Daughton, Roytershteyn, E. Wes Bethel, Mark Howison Ke-Jou Hsu, Kuan-Wu Lin, Arie Shoshani, Uselton, Kesheng Wu, « fewer authors
Parallel I/O, Analysis, and Visualization of a Particle Simulation,
Proceedings of SuperComputing 2012,
2012,
J Meyer, EW Bethel, JL Horsman, SS Hubbard, H Krishnan, A Romosan, EH… more authors » Keating, L Monroe, R Strelitz, P Moore, G Taylor, B Torkian, TC Johnson, I Gorton, « fewer authors
Visual data analysis as an integral part of environmental management,
IEEE Transactions on Visualization and Computer Graphics,
Pages: 2088--2094
2012,
doi: 10.1109/TVCG.2012.278
H Krishnan, J Meyer, A Romosan, H Childs, EW Bethel,
Enabling advanced environmental management via remote and distributed visual data exploration and analysis,
Computing and Visualization in Science,
Pages: 123--133
2012,
doi: 10.1007/s00791-013-0204-5
M Balman, E Pouyoul, Y Yao, EW Bethel, B Loring, Prabhat, J Shalf, A Sim, BL Tierney,
"Experiences with 100Gbps network applications",
DIDC 12 - 5th International Workshop on Data-Intensive Distributed Computing,
2012,
33--42,
doi: 10.1145/2286996.2287004
O. R\ ubel, S. Byna, K. Wu, F. Li, M., W. Bethel, others,
"TECA: A Parallel Toolkit for Extreme Climate",
Procedia Computer Science,
Elsevier,
2012,
9:866--876,
doi: 10.1016/j.procs.2012.04.093
D Ushizima, D Morozov, GH Weber, AGC Bianchi, JA Sethian, EW Bethel,
"Augmented topological descriptors of pore networks for material science",
IEEE Transactions on Visualization and Computer Graphics,
2012,
18:2041--2050,
LBNL 5964E,
doi: 10.1109/TVCG.2012.200
Allen R Sanderson, Brad Whitlock, H Childs, GH Weber, K Wu, others,
"A system for query based analysis and visualization",
January 2012,
LBNL 5507E,
TM Özgökmen, AC Poje, PF Fischer, H Childs, H Krishnan, C Garth, AC Haza, E Ryan,
On multi-scale dispersion under the influence of surface mixed layer instabilities and deep flows,
Ocean Modelling,
Pages: 16--30
2012,
doi: 10.1016/j.ocemod.2012.07.004
H Krishnan, C Garth, J Gühring, MA Gülsün, A Greiser, KI Joy,
Analysis of time-dependent flow-sensitive PC-MRI data,
IEEE Transactions on Visualization and Computer Graphics,
Pages: 966--977
2012,
doi: 10.1109/TVCG.2011.80
M Wan, WH Matthaeus, H Karimabadi, V Roytershteyn, M Shay, P Wu, W… more authors » Daughton, B Loring, SC Chapman, « fewer authors
"Intermittent dissipation at kinetic scales in collisionless plasma turbulence",
Physical Review Letters,
2012,
109,
doi: 10.1103/PhysRevLett.109.195001
Samuel Gerber, Oliver Rübel, Peer-Timo Bremer, Valerio Pascucci and Ross T. Whitaker,
"Morse-Smale Regression",
Journal of Computational and Graphical Statistics,
January 2012,
doi: 10.1080/10618600.2012.657132
- Download File: MSR.pdf (pdf: 292 KB)
K Beketayev, GH Weber, D Morozov, A Abzhanov, B Hamann,
"Geometry-preserving topological landscapes",
Proceedings - WASA 2012: Workshop at SIGGRAPH Asia 2012,
2012,
155--160,
doi: 10.1145/2425296.2425324
Dogan Demir, Kenes Beketayev, Gunther H. Weber, Peer-Timo Bremer, Valerio Pascucci, Bernd Hamann,
"Topology Exploration with Hierarchical Landscapes",
Proceedings of the Workshop at SIGGRAPH Asia 2012,
New York, NY, USA,
ACM,
2012,
147--154,
doi: 10.1145/2425296.2425323
2011
Tina Zhuo, Prabhat, Chris Paciorek and Cari Kaufman,
"Distributed Kriging Analysis for Large Spatial Data",
Proceedings of IEEE ICDM Workshop on Knowledge Discovery from Climate Data,
Vancuover, Canada,
December 2011,
Uselton, A., Ushizima, D.M.,
"I/O Workload Analysis with Server-side Data Collection",
Supercomputing (SC),
November 13, 2011,
E. Wes Bethel, David Leinweber, Oliver Rübel, Kesheng Wu,
"Federal Market Information Technology in the Post Flash Crash Era: Roles of Supercomputing",
Workshop on High Performance Computational Finance at SC11,
Seattle, WA, USA,
November 2011,
LBNL 5263E,
David Camp, Christoph Garth, Hank Childs, Dave Pugmire, Kenneth I. Joy,
"Streamline Integration Using MPI-Hybrid Parallelism on a Large Multicore Architecture",
IEEE Transactions on Visualization and Computer Graphics,
November 2011,
17:1702-1713,
LBNL 4563E,
doi: http://doi.ieeecomputersociety.org/10.1109/TVCG.2010.259
Huang, M.-Y., Mackey, L., Keraenen, S.V.E., Weber, G.H., Jordan, M.I.,… more authors » Knowles, D.W., Biggin, M.D. and Hamann, B., « fewer authors
"Visually Relating Gene Expression and in vivo DNA Binding Data",
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine 2011 (IEEE BIBM 2011),
Los Alamitos, California,
IEEE Computer Society Press,
November 2011,
586-589,
LBNL 5423E,
David Camp, Hank Childs, Amit Chourasia, Christoph Garth, Kenneth Joy,
"Evaluating the Benefits of An Extended Memory Hierarchy for Parallel Streamline Algorithms",
Proceedings IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV) 2011,
Providence, RI, USA,
IEEE Press,
October 2011,
57-64,
LBNL 5503E,
R. Ryne, B. Austin, J. Byrd, J. Corlett, E. Esarey, C. G. R. Geddes, W.… more authors » Leemans, X. Li, Prabhat, J. Qiang, O. Rübel, J.-L. Vay, M. Venturini, K. Wu, B. Carlsten, D. Higdon and N. Yampolsky, « fewer authors
"High Performance Computing in Accelerator Science: Past Successes, Future Challenges",
Workshop on Data and Communications in Basic Energy Sciences: Creating a Pathway for Scientific Discovery,
October 2011,
Ushizima, D.M., Parkinson, D., Nico, P., Ajo-Franklin, J., Macdowell, A.,… more authors » Kocar, B., Bethel E.W, Sethian J.A., « fewer authors
"Statistical segmentation and porosity quantification of 3D x-ray microtomography",
XXXIV Applications of Digital Image Processing: Proceeding of SPIE 2011,
San Diego, CA, USA,
August 2011,
Michael Philpott, Prabhat and Yoshiyuki Kawazoe,
"Magnetism and Bonding in Graphene Nanodots with H modified Interior, Edge and Apex",
J. Chem Physics,
August 2011,
Christopher Paciorek, Michael Wehner, and Prabhat,
"Computationally-efficient Spatial Analysis of Precipitation Extremes Using Local Likelihood",
Statistical and Applied Mathematical Sciences Institute Uncertainty Quantification program, Climate Modeling Opening Workshop,
August 2011,
Ushizima, D.M., Weber, G.H., Ajo-Franklin, J., Kim, Y., Macdowell, A.,… more authors » Morozov, D., Nico, P., Parkinson, D., Trebotich, D., Wan, J., and Bethel E.W., « fewer authors
"Analysis and visualization for multiscale control of geologic CO2",
Journal of Physics: Conference Series, Proceedings of SciDAC 2011,
July 2011,
LBNL Denver, CO, USA,
Richard L. Martin, Thomas F. Willems, Chris H. Rycroft, Prabhat, Michael… more authors » Kazi and Maciej Haranczyk, « fewer authors
"High-throughput structure analysis and descriptor generation for crystalline porous materials",
International Conference on Chemical Structures (Noordwijkerhout, Netherlands),
June 5, 2011,
Weber, G.H., Bremer, P.T., Gyulassy A., and Pascucci,
"Topology-based Feature Definition and Analysis",
Numerical Modeling of Space Plasma Flows,
San Diego, CA, USA,
Astronomical Society of the Pacific,
June 2011,
444:292-297,
LBNL 5020E,
Beketayev, K., Weber, G.H., Haranczyk, M., Bremer, P.-T., Hlawitschka, M., and Hamann, B.,
"Topology-based Visualization of Transformation Pathways in Complex Chemical Systems",
Computer Graphics Forum (Special Issue, Proc. Eurographics / IEEE Symposium on Visualization),
June 2011,
663-672,
LBNL 5242E,
C. Harrison, H. Childs, and K. P. Gaither,
"Data-Parallel Mesh Connected Components Labeling and Analysis",
Proceedings of EuroGraphics Symposium on Parallel Graphics and Visualization,
April 2011,
131-140,
LBNL 5944E,
doi: 10.2312/EGPGV/EGPGV11/131-140
Richard L. Martin, Maciej Haranczyk, Prabhat and James A. Sethian,
"PDE-based analysis of void space of porous materials on multicore CPUs",
Manycore and Accelerator-based High-performance Scientific Computing 2011 (Berkeley, CA),
January 24, 2011,
M Prabhat, S Byna, C Paciorek, G Weber, K Wu, T Yopes, MF Wehner, G… more authors » Ostrouchov, D Pugmire, R Strelitz, others, « fewer authors
"Pattern Detection and Extreme Value Analysis on Large Climate Data",
AGUFM,
Pages: IN41C--03
January 2011,
Mark Howison, Mike McGreevy, Bruce Palmer, Oliver Ruebel, Kesheng Wu,
"ExaHDF5: An I/O Platform for Exascale Data Models, Analysis and Performance",
2011,
Jerry Chou, Mark Howison, Brian Austin, Kesheng Wu, Ji Qiang, E Wes Bethel,… more authors » Arie Shoshani, Oliver R\ ubel, Rob D Ryne, « fewer authors
"Parallel index and query for large scale data analysis",
Proceedings of 2011 international conference for high performance computing, networking, storage and analysis,
2011,
1--11,
LBNL 5317E,
Luke J. Gosink, Christoph Garth, John C. Anderson, E. Wes Bethel, and Kenneth I. Joy,
"An Application of Multivariate Statistical Analysis for Query-Driven Visualization",
IEEE Transactions on Visualization and Computer Graphics,
2011,
11:264-275,
LBNL 3536E,
doi: 10.1109/TVCG.2010.80
E. Wes Bethel, John van Rosendale, Dale Southard, Kelly Gaither, Hank… more authors » Childs, Eric Brugger, Sean Ahern, « fewer authors
"Visualization at Supercomputing Centers: The Tale of Little Big Iron and the Three Skinny Guys",
IEEE Computer Graphics and Applications,
January 2011,
31:90-95,
LBNL 4180E,
Maciej Haranczyk, Richard L. Martin, Prabhat, James A. Sethian & E. Wes Bethel,
"Computational Approaches for the High-Throughput Analysis of Porous materials for Energy related applications",
Scientific Discovery through Advanced Computing 2011,
2011,
J. Chou, K. Wu, O. R\ ubel, M. Howison, Qiang, Prabhat, B. Austin, E. W.… more authors » Bethel, D. Ryne, A. Shoshani, « fewer authors
"Parallel Index and Query for Large Scale Data",
SC11,
2011,
doi: 10.1145/2063384.2063424
Prabhat, S. Byna, C. Paciorek, G. Weber, Wu, T. Yopes, M. Wehner, W.… more authors » Collins, G., R. Strelitz, E. W. Bethel, « fewer authors
Pattern Detection and Extreme Value Analysis on Large Data,
DOE/BER Climate and Earth System Modeling PI Meeting,
2011,
E. W. Bethel, D. Leinweber, O. Rübel, K.,
Federal Market Information Technology in the Post Crash Era: Roles for Supercomputing,
WHPCF,
Pages: 23--30
2011,
doi: 10.1145/2088256.2088267
Prabhat, Quincey Koziol, Karen Schuchardt, E. Wes Bethel, Jerry Chuo,… more authors » Mark Howison, Mike, Bruce Palmer, Oliver Ruebel, Kesheng, « fewer authors
ExaHDF5: An I/O Platform for Exascale Data Analysis and Performance,
SciDAC 2011,
2011,
Surendra Byna, Michael F Wehner, Kesheng John Wu,
"Detecting atmospheric rivers in large climate datasets",
Proceedings of the 2nd international workshop on Petascal data analytics: challenges and opportunities,
2011,
7--14,
Show Details
Extreme precipitation events on the western coast of North America are often traced to an unusual weather phenomenon known as atmospheric rivers. Although these storms may provide a significant fraction of the total water to the highly managed western US hydrological system, the resulting intense weather poses severe risks to the human and natural infrastructure through severe flooding and wind damage. To aid the understanding of this phenomenon, we have developed an efficient detection algorithm suitable for analyzing large amounts of data. In addition to detecting actual events in the recent observed historical record, this detection algorithm can be applied to global climate model output providing a new model validation methodology. Comparing the statistical behavior of simulated atmospheric river events in models to observations will enhance confidence in projections of future extreme storms. Our detection algorithm is based on a thresholding condition on the total column integrated water vapor established by Ralph et al. (2004) followed by a connected component labeling procedure to group the mesh points into connected regions in space. We develop an efficient parallel implementation of the algorithm and demonstrate good weak and strong scaling. We process a 30-year simulation output on 10,000 cores in under 3 seconds.
Jerry Chou, Kesheng Wu, others,
"Fastquery: A parallel indexing system for scientific data",
2011 IEEE International Conference on Cluster Computing,
2011,
455--464,
Prabhat, Dmitry Zubarev and W. A. Lester,
"Statistical Exploration of Electronic Structure of Molecules from Quantum Monte Carlo Simulations",
2011,
LBNL 4564E,
Jerry Chuo, John Wu, Prabhat,
"Design of FastQuery: how to generalize Indexing and Querying systems for scientific data",
2011,
Jerry Chuo, John Wu, Prabhat,
"FastQuery: a general Index and Query system for scientific data",
Scientific and Statistical Database Management Conference 2011,
2011,
MacCarthy, B., Carr, H., Weber, G.H.,
"Topological Galleries: A High Level User Interface for Topology Controlled Volume Rendering",
2011,
LBNL 5019E,
Weber, G.H., Bremer, P.-T. and Pascucci, V.,
"Topological Cacti: Visualizing Contour-based Statistics",
Topological Methods in Data Analysis and Visualization II,
(Springer Verlag:
2011)
Pages: 63-76,
LBNL 5018E,
Deines E., Weber, G.H., Garth, C., Van Straalen, B. Borovikov, S., Martin,… more authors » D.F., and Joy, K.I., « fewer authors
"On the computation of integral curves in adaptive mesh refinement vector fields",
Proceedings of Dagstuhl Seminar on Scientific Visualization 2009,
Schloss Dagstuhl,
2011,
2:73-91,
LBNL 4972E,
- Download File: 7.pdf (pdf: 799 KB)
Bremer, P.-T., Weber, G.H., Tierny, J., Pascucci, V., Day, M.S., and Bell, J.B.,
"Interactive Exploration and Analysis of Large Scale Turbulent Combustion Using Topology-based Data Segmentation",
IEEE Transactions on Visualization and Computer Graphics,
2011,
17(9):1307-1324,
LBNL 5921E,
doi: 10.1109/TVCG.2010.253
G Weber, PT Bremer, M Day, J Bell, V Pascucci,
"Feature tracking using Reeb graphs",
Mathematics and Visualization,
(
2011)
Pages: 241--253,
LBNL 4226E,
doi: 10.1007/978-3-642-15014-2_20
2010
Min-Yu Huang, Gunther H. Weber, Xiao-Yong Li, Mark D. Biggin, and Bernd Hamann,
"Quantitative Visualization of ChIP-chip Data by Using Linked Views",
Proceedings IEEE International Conference on Bioinformatics and Biomedicine 2010 (IEEE BIBM 2010) Workshops, Workshop on Integrative Data Analysis in Systems Biology (IDASB),
Los Alamitos, California,
IEEE Computer Society Press,
December 8, 2010,
195-200,
LBNL 4491E,
Patrick Oesterling, Gerik Scheuermann, Sven Teresniak, Gerhard Heyer,… more authors » Steffen Koch, Thomas Ertl, Gunther H. Weber, « fewer authors
"Two-stage Framework for a Topology-Based Projection and Visualization of Classified Document Collections",
Proceedings IEEE Symposium on Visual Analytics Science and Technology (IEEE VAST),
Salt Lake City, Utah, USA,
October 2010,
LBNL 4074E,
Mark Howison, Andreas Adelmann, E. Wes Bethel, Achim Gsell, Benedikt Oswald, Prabhat,
"H5hut: A High-Performance I/O Library for Particle-Based Simulations",
Proceedings of 2010 Workshop on Interfaces and Abstractions for Scientific Data Storage (IASDS10),
Heraklion, Crete, Greece,
September 2010,
LBNL 4021E,
Mark Howison, Quincey Koziol, David Knaak, John Mainzer, John Shalf,
"Tuning HDF5 for Lustre File Systems",
Proceedings of 2010 Workshop on Interfaces and Abstractions for Scientific Data Storage (IASDS10),
Heraklion, Crete, Greece,
September 2010,
LBNL 4803E,
D. M. Ushizima, F. N. S. Medeiros, J. Cuadros, C. I. O. Martins,
"Vessel Network Detection Using Contour Evolution and Color Components",
Proceedings of the 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society,
Buenos Aires, Argentina,
PubMed-MedLine,
September 2010,
3129-3132,
C. Rycroft, D. M. Ushizima, R. Saye, C. M. Ghajar, J. A. Sethian,
"Building a physical cell simulation and comparing with confocal microscopy",
Bay Area Physical Sciences - Oncology Center (NCI) Meeting 2010, UCSF Medical Sciences,
September 2010,
M. Howison, E. W. Bethel, and H. Childs,
"Hybrid Parallelism for Volume Rendering on Large, Multi-core Systems",
Journal of Physics: Conference Series, Proceedings of SciDAC 2010,
Chattanooga, TN, USA,
July 2010,
LBNL 4024E,
M. Howison, E. W. Bethel, and H. Childs,
"Hybrid Parallelism for Volume Rendering on Large, Multi-core Systems",
Proceedings of Astronum 2010,
San Diego, CA, USA,
June 2010,
LBNL 4024E,
T.Fogal, H. Childs, S. Shankar, J. Kruger, R.D. Bergeron, and P. Hatcher,
"Large Data Visualization on Distributed Memory Multi-GPU Clusters",
High Performance Graphics 2010,
June 2010,
57-66,
LBNL 4571E,
J. Meredith and H. Childs,
"Visualization and Analysis-Oriented Reconstruction of Material Interfaces",
Computer Graphics Forum (Proceedings of Eurographics/IEEE-VGTC Symposium on Visualization 2010 (EuroVis 2010)),
June 2010,
1241-1250,
LBNL 4567E,
Mark Howison, E. Wes Bethel, Hank Childs,
"MPI-hybrid Parallelism for Volume Rendering on Large, Multi-core Systems",
In Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization (EGPGV),
Norköping, Sweden,
May 2010,
LBNL 3297E,
A.Uselton, K.Antypas, D.M.Ushizima, J.Sukharev,
"File System Monitoring as a Window Into User I/O Requirements",
CUG-2010,
May 2010,
D. M. Ushizima, F. Medeiros,
"Retinopathy diagnosis from ocular fundus image analysis, Modeling and Analysis of Biomedical Image",
SIAM Conference on Imaging Science (IS10),
Chicago, Il,
April 2010,
O. Rübel, G. H. Weber, M-Y Huang, E. W. Bethel, M. D. Biggin, C. C.… more authors » Fowlkes, C. Luengo Hendriks, S. V. E. Keränen, M. Eisen, D. Knowles, J. Malik, H. Hagen and B. Hamann, « fewer authors
"Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data",
IEEE Transactions on Computational Biology and Bioinformatics,
March 2010,
7:64-79,
LBNL 382E,
D. M. Ushizima and J. Cuadros,
"Ocular fundus for retinopathy characterization",
Bay Area Vision Meeting,
February 5, 2010,
Daniela Ushizima, Cameron Geddes, Estelle Cormier-Michel, E. Wes Bethel,… more authors » Janet Jacobsen, Prabhat, Oliver Rubel, Gunther Weber, Bernard Hamann, Peter Messmer, Hans Hagen, « fewer authors
"Automated detection and analysis of particle beams in laser-plasma accelerator simulations",
Machine Learning,
edited by Yagang Zhang,
(In-Teh:
February 2010)
Pages: 367-389,
LBNL 3845E,
Ichitaro Yamazaki, Zhaojun Bai, Horst D. Simon Lin-Wang Wang, Kesheng Wu,
"Adaptive Projection Subspace Dimension for the Lanczos Method",
ACM Transactions on Mathematical Software,
2010,
37,
doi: 10.1145/1824801.1824805
Oliver R\ ubel, Sean Ahern, E Wes Bethel, Mark D Biggin, Hank Childs,… more authors » Estelle Cormier-Michel, Angela DePace, Michael B Eisen, Charless C Fowlkes, Cameron GR Geddes, others, « fewer authors
"Coupling visualization and data analysis for knowledge discovery from multi-dimensional scientific data",
Procedia computer science,
Elsevier,
January 2010,
1:1757--1764,
LBNL 3669E,
E. Wes Bethel,
"Using wesBench to Study the Rendering Performance of Graphics Processing Units",
2010,
LBNL 3025E,
Gunther Weber,
"Recent advances in visit: Amr streamlines and query-driven visualization",
2010,
Oliver Rübel, Sean Ahern, E. Wes Bethel, D. Biggin, Hank Childs, Estelle,… more authors » Angela DePace, Michael B. Eisen Charless C. Fowlkes, Cameron G. R. Geddes, Hagen, Bernd Hamann, Min-Yu Huang, Soile E. Keränen, David W. Knowles, Cris L. Hendriks, Jitendra Malik, Jeremy Meredith Peter Messmer, Prabhat, Daniela Ushizima, H. Weber, Kesheng Wu, « fewer authors
"Coupling visualization and data analysis for knowledge from multi-dimensional scientific data",
Procedia Computer Science,
2010,
1:1751--1758,
doi: 10.1016/j.procs.2010.04.197
Andrew Uselton, Howison, J. Wright, Skinner, Keen, Shalf, L. Karavanic, Leonid Oliker,
"Parallel I/O performance: From events to ensembles",
International Parallel & Distributed Processing Symposium (IPDPS),
2010,
1-11,
PT Bremer, GH Weber, V Pascucci, M Day, JB Bell,
"Analyzing and tracking burning structures in lean premixed hydrogen flames",
IEEE Transactions on Visualization and Computer Graphics,
2010,
16:248--260,
LBNL 2276E,
doi: 10.1109/TVCG.2009.69
2009
E. Wes Bethel, Hank Childs, Ajith Mascarenhas, Valerio Pascucci, and Prabhat,
"Scientific Data Management Challenges in High Performance Visual Data Analysis",
Scientific Data Management: Challenges, Existing Technology, and Deployment,
edited by Arie Shoshani and Doron Rotem,
(Chapman & Hall CRC Press:
December 2009)
LBNL 1449E,
D. Pugmire, H. Childs, C. Garth, S. Ahern, G.H. Weber,
"Scalable computation of streamlines on very large datasets",
Proc. Supercomputing,
Portland, OR, USA,
November 2009,
LBNL 3264E,
E. W. Bethel, C. Johnson, S. Ahern, J. Bell, P.-T. Bremer, H. Childs, E.… more authors » Cormier-Michel, M. Day, E. Deines, T. Fogal, C. Garth, C. G. R. Geddes, H. Hagen, B. Hamann, C. Hansen, J. Jacobsen, K. Joy, J. Kruger, J. Meredith, P. Messmer, G. Ostrouchov, V. Pascucci, K. Potter, Prabhat, D. Pugmire, O. Rubel, A. Sanderson, C. Silva, D. Ushizima, G. Weber, B. Whitlock, K. Wu, « fewer authors
"Occam's Razor and Petascale Visual Data Analysis",
SciDAC 2009, J. of Physics: Conference Series,
San Diego, California,
July 2009,
LBNL 2210E,
N. Shah, N., S. E. Dillard, G.H. Weber, B. Hamann,
"Volume visualization of multiple alignment of large genomic DNA",
Mathematical Foundations of Scientific Visualization, Computer Graphics, and Massive Data Exploration,
edited by Torsten Moller and Bernd Hamann and Robert Russell,
(Springer-Verlag:
July 2009)
Pages: 325-342,
LBNL 63126,
Luke Gosink, Kesheng Wu, E. Wes Bethel, John D. Owens, Kenneth I. Joy,
"Data Parallel Bin-based Indexing for Answering Queries on Multi-core Architecture",
Proceedings of the 21st International Conference on Scientific and Statistical Database Management (SSDBM),
June 2009,
5566:110-129,
LBNL 2211E,
Mark Howison and Carlo Sequin,
"CAD Tools for Creating Space-filling 3D Escher Tiles",
Computer-Aided Design and Applications,
Reno, NV, USA,
June 2009,
6:737-748,
LBNL 2467E,
Shoaib Kamil, Cy Chan, Samuel Williams, Leonid Oliker, John Shalf, Mark… more authors » Howison, E. Wes Bethel, Prabhat, « fewer authors
"A Generalized Framework for Auto-tuning Stencil Computations",
BEST PAPER AWARD - Cray User Group Conference (CUG),
Atlanta, GA,
May 4, 2009,
LBNL 2078E,
Show Details
M. Hlawitschka, G.H. Weber, A. Anwander, O.T. Carmichael, B. Hamann and G. Scheuermann,
"Interactive Volume Rendering of Diffusion Tensor Data",
Visualization and Processing of Tensor Fields: Advances and Perspectives,
(Springer-Verlag:
April 2009)
Pages: 161-176,
LBNL 2286E,
S. E. Dillard, V. Natarjan, G. H. Weber, V. Pascucci and B. Hamann,
"Topology-guided Tessellation of Quadratic Elements",
International Journal of Computational Geometry & Applications (IJCGA),
April 2009,
19:195-211,
LBNL 63771,
C. Garth, E. Deines, K. Joy, E. W. Bethel, H. Childs, G. Weber, S. Ahern,… more authors » D. Pugmire, A. Sanderson, C. Johnson, « fewer authors
Twists and Turns: Vector Field Visual Data Analysis for Petascale Computational Science,
SciDAC Review,
Pages: 10-21,
2009,
Oliver R\ ubel, Cameron GR Geddes, Estelle Cormier-Michel, Kesheng Wu,… more authors » Gunther H Weber, Daniela M Ushizima, Peter Messmer, Hans Hagen, Bernd Hamann, Wes Bethel, others, « fewer authors
"Automatic beam path analysis of laser wakefield particle acceleration data",
Computational Science \& Discovery,
January 2009,
2:015005,
LBNL 2734E,
K Wu, S Ahern, EW Bethel, J Chen, H Childs, C Geddes, J Gu, H Hagen, B… more authors » Hamann, J Lauret, others, « fewer authors
"FastBit: Interactively Searching Massive Data",
Proc. of SciDAC 2009,
2009,
LBNL 2164E,
C. G. R. Geddes, E Cormier-Michel, E. H. Esarey, C. B. Schroeder, J.-L.… more authors » Vay, W. P. Leemans, D. L.. Bruhwiler, J. R. Cary, B. Cowan, M. Durant, P. Hamill, P. Messmer, P. Mullowney, C. Nieter, K. Paul, S. Shasharina, S. Veitzer, G. Weber, O. Rübel, D. Ushizima, Prabhat, E. W.Bethel, K. Wu, « fewer authors
Large Fields for Smaller Facility Sources,
SciDAC Review,
Pages: 13-21,
2009,
E. Wes Bethel,
"High Performance, Three-Dimensional Bilateral Filtering",
2009,
LBNL 1601E,
E Bethel,
"Modern Scientific Visualization is More than Just Pretty Pictures",
January 2009,
LBNL 1450E,
Luke J Gosink, Kesheng Wu, E Wes Bethel, John D Owens, Kenneth I Joy,
"Data parallel bin-based indexing for answering queries on multi-core architectures",
International Conference on Scientific and Statistical Database Management,
2009,
110--129,
Show Details
E Wes Bethel, Chris Johnson, Sean Ahern, John Bell, Peer-Timo Bremer, Hank… more authors » Childs, Estelle Cormier-Michel, Marc Day, Eduard Deines, Tom Fogal, others, « fewer authors
"Occam s razor and petascale visual data analysis",
Journal of Physics: Conference Series,
2009,
180:012084,
Luke J. Gosink, Kesheng Wu, E. Wes Bethel, D. Owens, Kenneth I. Joy,
Data Parallel Bin-Based Indexing for Answering Queries Multi-core Architectures,
Lecture Notes in Computer Science,
Pages: 110--129
2009,
doi: 10.1007/978-3-642-02279-1_9
Oliver R\ ubel, Cameron G R Geddes, Estelle, Kesheng Wu, Prabhat, Gunther… more authors » H, Daniela M Ushizima, Peter Messmer, Hans, Bernd Hamann, Wes Bethel, « fewer authors
"Automatic beam path analysis of laser wakefield acceleration data",
Computational Science \& Discovery,
2009,
2:015005,
H Krishnan, C Garth, KI Joy,
Time and streak surfaces for flow visualization in large time-varying data sets,
IEEE Transactions on Visualization and Computer Graphics,
Pages: 1267--1274
2009,
doi: 10.1109/TVCG.2009.190
G. H. Weber, O. Rübel, M.-Y. Huang, A. H. DePace, C. C. Fowlkes, S. V. E.… more authors » Keränen, C. L. Luengo Hendriks, H. Hagen, D. W. Knowles, J. Malik, M. D. Biggin and B. Hamann, « fewer authors
"Visual exploration of three-dimensional gene expression using physical views and linked abstract views",
IEEE Transactions on Computational Biology and Bioinformatics,
2009,
6:296-309,
LBNL 63776,
doi: 10.1109/TCBB.2007.70249
C. I. O. Martins, D. M. Ushizima, F. N. S. Medeiros, F. N. Bezerra, R. C.… more authors » P. Marques, N. D. A. Mascarenhas, « fewer authors
"Iterative Self-dual Reconstruction on Radar Image Recovery",
Proc. of IEEE Workshop on Applications of Computer Vision,
Snowbird, Utah,
2009,
37-42,
LBNL 3846E,
Regis C. P. Marques, Fatima N. S. Medeiros, Daniela M. Ushizima,
"Target Dectection on SAR Images Using Level Set Methods",
IEEE Transactions on Systems, Man and Cybernetics,
2009,
39:214-222,
LBNL 958E,
doi: 10.1109/TSMCC.2008.2006685
PT Bremer, GH Weber, J Tierny, V Pascucci, MS Day, JB Bell,
"A topological framework for the interactive exploration of large scale turbulent combustion",
e-Science 2009 - 5th IEEE International Conference on e-Science,
January 2009,
247--254,
LBNL 3183E,
doi: 10.1109/e-Science.2009.42
2008
O. Rübel, Prabhat, K. Wu, H. Childs, J. Meredith, C.G.R. Geddes, E.… more authors » Cormier-Michel, S. Ahern, G.H. Weber, P. Messmer, H. Hagen, B. Hamann and E.W. Bethel, « fewer authors
"High Performance Multivariate Visual Data Exploration for Extemely Large Data",
Supercomputing (SC),
Austin, Texas, USA,
November 2008,
LBNL 716E,
O. Rübel, Prabhat, K. Wu, H. Childs, J. Meredith, C.G.R. Geddes, E.… more authors » Cormier-Michel, S. Ahern, G.H. Weber, P. Messmer, H. Hagen, B. Hamann and E.W. Bethel, « fewer authors
"Application of High-performance Visual Analysis Methods to Laser Wakefield Particle Acceleration Data",
IEEE Visualization 2008,
October 2008,
B. Paul, S. Ahern, E. W. Bethel, E. Brugger, R. Cook, J. Daniel, K. Lewis,… more authors » J. Owen, and D. Southard, « fewer authors
"Chromium Renderserver: Scalable and Open Remote Rendering Infrastructure",
IEEE Transactions on Visualization and Computer Graphics,
May 2008,
14:627-639,
LBNL 63693,
C. C. Fowlkes, C. L. Luengo Hendriks, S. V. E. Keränen, G. H. Weber, O.… more authors » Rübel, M.-Y. Huang, S. Chatoor, A. H. DePace, L. Simirenko, C. Henriquez, A. Beaton, R. Weiszmann, S. Celniker, B. Hamann, D. W. Knowles, M. D. Biggin, M. B. Eisen, J. Malik, « fewer authors
"A Quantitative Spatio-temporal Atlas of Gene Expression in the Drosophila Blastoderm",
Cell,
April 18, 2008,
133:364-374,
G.H. Weber, V. Beckner, H. Childs, T. Ligocki, M. Miller, B. van Straalen, E.W. Bethel,
"Visualization of Scalar Adaptive Mesh Refinement Data",
Numerical Modeling of Space Plasma Flows: Astronum-2007 (Astronomical Society of the Pacific Conference Series),
April 2008,
385:309-320,
LBNL 220E,
J. Chen, I. Yoon and E. W. Bethel,
"Interactive, Internet Delivery of Visualization via Structured, Prerendered Multiresolution Imagery.",
IEEE Transactions on Visualization and Computer Graphics,
March 2008,
14:302-312,
LBNL 62252,
Daniela Ushizima, Oliver Rübel, Prabhat, Gunther Weber, E. Wes Bethel,… more authors » Cecilia Aragon, Cameron Geddes, Estelle Cormier-Michel, Bernd Hamann, Peter Messmer, Hans Hagen, « fewer authors
"Automated Analysis for Detecting Beams in Laser Wakefield Simulations",
2008 Seventh International Conference on Machine Learning and Applications, Proceedings of IEEE ICMLA'08,
2008,
382-387,
LBNL 960E,
Luke J. Gosink, John C. Anderson, E. Wes Bethel, Kenneth I. Joy,
"Query-Driven Visualization of Time-Varying Adaptive Mesh Refinement Data",
IEEE Transactions on Visualization and Computer Graphics,
2008,
14:1715-1722,
LBNL 803E,
Luke J Gosink,
"Bin-hash indexing: A parallel method for fast query processing",
2008,
LBNL 729E,
E. Wes Bethel, Chris Johnson, Charles Hansen, Claudio Silva, Steven Parker,… more authors » Allen Sanderson, Lee Myers, Martin Cole, Xavier Tricoche, Sean Ahern, George Ostrouchov, Dave Pugmire, Jamison Daniel, Jeremy Meredith, Valerio Pascucci, Hank Childs, Peer-Timo Bremer, Ajith Mascarenhas, Ken Joy, Bernd Hamann, Christoph Garth, Cecilia Aragon, Gunther Weber, and Prabhat, « fewer authors
Seeing the Unseeable,
SciDAC Review,
Pages: 24-33,
2008,
O. Rübel, G. H. Weber, M-Y Huang, E. W. Bethel, S. V. E. Keränen, C. C.… more authors » Fowlkes, C. L. Luengo Hendriks, A. H. DePace, L. Simirenko, M. B. Eisen, M. D. Biggin, H. Hagen, J. Malik, D. W. Knowles and B. Hamann, « fewer authors
"PointCloudXplore 2: Visual Exploration of 3D Gene Expression",
Visualization of Large and Unstructured Data Sets,
edited by C. Garth, H. Hagen, M. Hering-Bertram,
(Gesellschaft fuer Informatik (GI):
2008)
LBNL 249E,
William T.C. Kramer, John M. Shalf, E. Wes Bethel, D. Agarwal, Michael… more authors » Banda, John Hules, Juan C. Meza, Leonid Oliker, Horst Simon, David Skinner, Francesca Verdier, Howard Walter, Michael Wehner, and Katherine Yelick, « fewer authors
"HPC in 2016: A View Point from NERSC",
Proceedings of the Cray User Group Conference,
Helsinki, Finland,
2008,
Luke J. Gosink, Kesheng Wu, E. Wes Bethel, D. Owens, Kenneth I. Joy,
Bin-Hash Indexing: A Parallel Method For Fast Processing,
2008,
E. Wes Bethel, Oliver Rübel, Prabhat, Wu, Gunther H. Weber, Valerio… more authors » Pascucci Hank Childs, Ajith Mascarenhas, Jeremy, Sean Ahern, « fewer authors
"Modern Scientific Visualization is More than Just Pictures",
Numerical Modeling of Space Plasma Flows: (Astronomical Society of the Pacific Series),
St. Thomas, USVI,
2008,
301--317,
Oliver R\ ubel, Prabhat, Kesheng Wu, Hank, Jeremy Meredith, Cameron G. R.… more authors » Geddes, Cormier-Michel, Sean Ahern, Gunther H., Peter Messmer, Hans Hagen, Bernd Hamann E. Wes Bethel, « fewer authors
Application of High-performance Visual Analysis to Laser Wakefield Particle Acceleration Data,
IEEE Visualization 2008,
2008,
Oliver R\ ubel, Prabhat, Kesheng Wu, Hank, Jeremy Meredith, Cameron G. R.… more authors » Geddes, Cormier-Michel, Sean Ahern, Gunther H., Peter Messmer, Hans Hagen, Bernd Hamann E. Wes Bethel, « fewer authors
High Performance Multivariate Visual Data Exploration Extemely Large Data,
SuperComputing 2008 (SC08),
Pages: 51
2008,
C Garth, H Krishnan, X Tricoche, T Bobach, KI Joy,
Generation of accurate integral surfaces in time-dependent vector fields,
IEEE Transactions on Visualization and Computer Graphics,
Pages: 1404--1411
2008,
doi: 10.1109/TVCG.2008.133
M.-Y. Huang, O. Rübel, G.H. Weber, C.L. Luengo Hendriks, M.D. Biggin, H. Hagen, B. Hamann,
"Segmenting Gene Expression Patterns of Early-stage Drosophila Embryos.",
Mathematical Methods for Visualization in Medicine and Life Sciences,
edited by L. Linsen, H. Hagen, B. Hamann,
(Springer-Verlag:
January 2008)
Pages: 313--327,
LBNL 62450,
C.I.O. Martins, R.M.S. Veras, G.L.B. Ramalho, F.N.S. Medeiros, D. M. Ushizima,
"Automatic Microaneurysm Detection and Characterization Through Digital Color Fundus Images",
Brazilian Artificial Intelligence Community Conference, Tenth Brazilian Symposium on Neural Networks, Proceedings of IEEE SBRN'2008,
2008,
2007
AR Fuller, H Krishnan, K Mahrous, B Hamann, KI Joy,
Real-time procedural volumetric fire,
Proceedings - I3D 2007, ACM SIGGRAPH Symposium on Interactive 3D Graphics and Games,
Pages: 175--180
2007,
doi: 10.1145/1230100.1230131
Shengyin Gu, Iain Anderson, Victor Kunin, Michael Cipriano, Minovitsky,… more authors » Gunther H. Weber, Nina Amenta, Bernd Hamann Inna Dubchak, « fewer authors
"TreeQ-VISTA: An Interactive Tree Visualization Tool with Functional Query Capabilities",
Bioinformatics,
2007,
23:764--766,
doi: 10.1093/bioinformatics/btl643
Gunther H. Weber, Scott E. Dillard, Hamish Carr, Pascucci, Bernd Hamann,
"Topology-Controlled Volume Rendering",
IEEE Transactions on Visualization and Computer Graphics,
2007,
13:330--341,
doi: 10.1109/TVCG.2007.47
Oliver G. Staadt, Vijay Natarjan, Gunther H. Weber, F. Wiley, B. Hamann,
"Interactive Processing and Visualization of Image Data for Biomedical and Science Applications",
BMC Cell Biology,
2007,
8:S10,
doi: 10.1186/1471-2121-8-S1-S10
Gunther H. Weber, Peer-Timo Bremer, Valerio Pascucci,
"Topological Landscapes: A Terrain Metaphor for Scientific Data",
IEEE Transactions on Visualization and Computer Graphics Issue: Proceedings of IEEE Visualization 2007),
2007,
13:1416--1423,
doi: 10.1109/TVCG.2007.70601
2006
K. Wu, K. Stockinger, A. Shoshani, Wes,
"FastBit--Helps Finding the Proverbial Needle in a",
2006,
LBNL LBNL-PUB/963,
Luke Gosink, John Shalf, Kurt Stockinger, Wu, Wes Bethel,
"HDF5-FastQuery: Accelerating Complex Queries on Datasets using Fast Bitmap Indices",
SSDBM 2006, Vienna, Austria, July 2006,
IEEE Computer Society Press.,
2006,
149--158,
Luke Gosink, John Shalf, Kurt Stockinger, Kesheng Wu, Wes Bethel,
HDF5-FastQuery: Accelerating complex queries on HDF datasets using fast bitmap indices,
18th International Conference on Scientific and Statistical Database Management (SSDBM 06),
Pages: 149--158
2006,
E. Wes Bethel, Scott Campbell, Eli Dart, Kurt Stockinger, Kesheng Wu,
Accelerating Network Traffic Analysis Using Visualization,
Symposium on Visual Analytics Science and Technology Baltimore, Maryland, USA, October 31 - November 2006,
Pages: 115--122
2006,
E. Wes Bethel, Scott Campbell, Eli Dart, John Shalf, Kurt Stockinger, Kesheng Wu,
High Performance Visualization using Query-Driven and Analytics,
2006,
Kurt Stockinger, E. Wes Bethel, Scott Campbell, Eli Dart, Kesheng Wu,
Detecting distributed scans using high-performance visualization,
SC 06,
Pages: 82
2006,
Cris L. Luengo Hendriks, Soile V. E. Keränen, C. Fowlkes, Lisa Simirenko,… more authors » Gunther H. Weber, H. DePace, Clara Henriquez, David W. Kaszuba, Hamann, Michael B. Eisen, Jitendra Malik, Damir Sudar, D. Biggin, David W. Knowles, « fewer authors
"Three-dimensional Morphology and Gene Expression in the Drosophila Blastoderm at Cellular Resolution I: Data Acquisition Pipeline",
Genome Biology,
2006,
7:R123,
doi: 10.1186/gb-2006-7-12-r123
2005
E. Wes Bethel, Scott Campbell, Eli Dart, Lee, Steven A. Smith, Kurt… more authors » Stockinger, Tierney, Kesheng Wu, « fewer authors
"Interactive Analysis of Large Network Data Collections Query-Driven Visualization",
2005,
Kurt Stockinger, John Shalf, Kesheng Wu, E Wes Bethel,
"Query-driven visualization of large data sets",
VIS 05. IEEE Visualization, 2005.,
2005,
167--174,
Kurt Stockinger, John Shalf, Wes Bethel, Kesheng Wu,
DEX: Increasing the Capability of Scientific Data Analysis by Using Efficient Bitmap Indices to Accelerate Scientific Visualization,
SSDBM,
Pages: 35-44
2005,
Horst D. Simon, William T.C. Kramer, David H. Bailey, Michael J. Banda, E.… more authors » Wes Bethel, Jonathan T. Carter, James M. Craw, William J. Fortney, John A. Hules, Nancy L. Meyer, Juan C. Meza, Esmond G. Ng, Lynn E. Rippe, William C. Saphir, Francesca Verdier, Howard A. Walter, Katherine A. Yelick, « fewer authors
"Science-Driven Computing: NERSC's Plan for 2006-2010",
2005,
Kurt Stockinger, Kesheng Wu, Scott Campbell, Lau, Mike Fisk, Eugene… more authors » Gavrilov, Alex, Christopher E. Davis, Rick Olinger, Rob, Jim Prewett, Paul Weber, Thomas P., E. Wes Bethel, Steve Smith, « fewer authors
Network Traffic Analysis With Query Driven,
SC 2005,
2005,
2003
Gunther H. Weber, Martin Öhler, Oliver Kreylos, John Shalf, Wes Bethel,… more authors » Bernd Hamann, Gerik Scheuermann, « fewer authors
"Parallel Cell Projection Rendering of Adaptive Mesh Refinement Data",
IEEE Symposium on Parallel and Large-Data Visualization and Graphics,
2003,
51-60,
E. Wes Bethel, Greg Abram, John Shalf, Randall Frank, Jim Ahrens, Steve… more authors » Parker, N. Samatova, Mark Miller, « fewer authors
Interoperability of Visualization Software and Data Models is NOT an Achievable Goal,
IEEE Visualization,
Pages: 607-610
2003,
T. J. Jankun-Kelly, Kreylos, Ma, Hamann, I. Joy, John Shalf, E. Wes Bethel,
Deploying Web-Based Visual Exploration Tools on the Grid,
IEEE Computer Graphics and Applications,
Pages: 40-50
2003,
E. Wes Bethel, John Shalf,
Grid-Distributed Visualizations Using Connectionless Protocols,
IEEE Computer Graphics and Applications,
Pages: 51-59
2003,
John Shalf, E. Wes Bethel,
The Grid and Future Visualization System Architectures,
IEEE Computer Graphics and Applications,
Pages: 6-9
2003,
2001
Gunther H. Weber, Oliver Kreylos, Terry J. Ligocki, Jonh Shalf, Hans Hagen,… more authors » Bernd Hamann, Ken I. Joy, Kwan-Liu Ma, « fewer authors
"High-quality Volume Rendering of Adaptive Mesh Refinement Data",
VMV,
2001,
121-128,
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