Computational Biosciences

Andrew Tritt

Andrew Tritt

Andrew Tritt

Computer Systems Engineer

ajtritt@lbl.gov

Phone: +1 608.438.0386

Andrew is a computer systems engineer in the Performance and Algorithms group. For more, see his staff page.

Journal Articles

M Peter, A Kohler, RA Ohm, A Kuo, J Krützmann, E Morin, M Arend, KW Barry, M Binder, C Choi, A Clum, A Copeland, N Grisel, S Haridas, T Kipfer, K Labutti, E Lindquist, A Lipzen, R Maire, B Meier, S Mihaltcheva, V Molinier, C Murat, S Pöggeler, CA Quandt, C Sperisen, A Tritt, E Tisserant, PW Crous, B Henrissat, U Nehls, S Egli, JW Spatafora, IV Grigoriev, FM Martin, "Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum", Nature Communications, 2016, 7, doi: 10.1038/ncomms12662

LG Nagy, R Riley, A Tritt, C Adam, C Daum, D Floudas, H Sun, JS Yadav, J Pangilinan, KH Larsson, K Matsuura, K Barry, K Labutti, R Kuo, RA Ohm, SS Bhattacharya, T Shirouzu, Y Yoshinaga, FM Martin, IV Grigoriev, DS Hibbett, "Comparative genomics of early-diverging mushroom-forming fungi provides insights into the origins of lignocellulose decay capabilities", Molecular Biology and Evolution, 2016, 33:959--970, doi: 10.1093/molbev/msv337

A Kohler, A Kuo, LG Nagy, E Morin, KW Barry, F Buscot, B Canbäck, C Choi, N Cichocki, A Clum, J Colpaert, A Copeland, MD Costa, J Doré, D Floudas, G Gay, M Girlanda, B Henrissat, S Herrmann, J Hess, N Högberg, T Johansson, HR Khouja, K Labutti, U Lahrmann, A Levasseur, EA Lindquist, A Lipzen, R Marmeisse, E Martino, C Murat, CY Ngan, U Nehls, JM Plett, A Pringle, RA Ohm, S Perotto, M Peter, R Riley, F Rineau, J Ruytinx, A Salamov, F Shah, H Sun, M Tarkka, A Tritt, C Veneault-Fourrey, A Zuccaro, A Tunlid, IV Grigoriev, DS Hibbett, F Martin, "Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists", Nature Genetics, 2015, 47:410--415, doi: 10.1038/ng.3223

D Floudas, BW Held, R Riley, LG Nagy, G Koehler, AS Ransdell, H Younus, J Chow, J Chiniquy, A Lipzen, A Tritt, H Sun, S Haridas, K LaButti, RA Ohm, U Kües, RA Blanchette, IV Grigoriev, RE Minto, DS Hibbett, "Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii", Fungal Genetics and Biology, 2015, 76:78--92, doi: 10.1016/j.fgb.2015.02.002

H Muraguchi, K Umezawa, M Niikura, M Yoshida, T Kozaki, K Ishii, K Sakai, M Shimizu, K Nakahori, Y Sakamoto, C Choi, CY Ngan, E Lindquist, A Lipzen, A Tritt, S Haridas, K Barry, IV Grigoriev, PJ Pukkila, "Strand-specific RNA-seq analyses of fruiting body development in Coprinopsis cinerea", PLoS ONE, 2015, 10, doi: 10.1371/journal.pone.0141586

EA Becker, PM Seitzer, A Tritt, D Larsen, M Krusor, AI Yao, D Wu, D Madern, JA Eisen, AE Darling, MT Facciotti, "Phylogenetically Driven Sequencing of Extremely Halophilic Archaea Reveals Strategies for Static and Dynamic Osmo-response", PLoS Genetics, 2014, 10, doi: 10.1371/journal.pgen.1004784

M Toome, A Kuo, B Henrissat, A Lipzen, A Tritt, Y Yoshinaga, M Zane, K Barry, IV Grigoriev, JW Spatafora, MC Aime, "Draft genome sequence of a rare smut relative, Tilletiaria anomala UBC 951", Genome Announcements, 2014, 2, doi: 10.1128/genomeA.00539-14

A Tritt, JA Eisen, MT Facciotti, AE Darling, "An Integrated Pipeline for de Novo Assembly of Microbial Genomes", PLoS ONE, 2012, 7, doi: 10.1371/journal.pone.0042304

AE Darling, A Tritt, JA Eisen, MT Facciotti, "Mauve assembly metrics", Bioinformatics, 2011, 27:2756--2757, doi: 10.1093/bioinformatics/btr451

YS Dufour, GE Wesenberg, AJ Tritt, JD Glasner, NT Perna, JC Mitchell, TJ Donohue, "chipD: a web tool to design oligonucleotide probes for high-density tiling arrays", Nucleic Acids Research, 2010, 38:W321--W325, doi: 10.1093/nar/gkq517

Reports

Oliver Rübel, Andrew Tritt, Benjamin Dichter, Thomas Braun, Nicholas Cain, Nathan Clack, Thomas J. Davidson, Max Dougherty, Jean-Christophe Fillion-Robin, Nile Graddis, Michael Grauer, Justin T. Kiggins, Lawrence Niu, Doruk Ozturk, William Schroeder, Ivan Soltesz, Friedrich T. Sommer, Karel Svoboda, Lydia Ng, Loren M. Frank, Kristofer Bouchard, "NWB:N 2.0: An Accessible Data Standard for Neurophysiology", bioRxiv, January 17, 2019, doi: https://doi.org/10.1101/523035