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Marquita Ellis

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Marquita Ellis
Graduate Student Research Assistant
Phone: 510-495-2431
UC Berkeley

Journal Articles

Giulia Guidi, Marquita Ellis, Daniel Rokhsar, Katherine Yelick, Aydın Buluç, "BELLA: Berkeley Efficient Long-Read to Long-Read Aligner and Overlapper (Preprint)", Submitted, 2018, doi: https://doi.org/10.1101/464420

Conference Papers

Marquita Ellis, Giulia Guidi, Aydın Buluç, Leonid Oliker, Katherine Yelick, "diBELLA: Distributed Long Read to Long Read Alignment", 48th International Conference on Parallel Processing (ICPP), June 25, 2019,

M Ellis, E Georganas, R Egan, S Hofmeyr, A Buluç, B Cook, L Oliker, K Yelick, "Performance characterization of de novo genome assembly on leading parallel systems", Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2017, 10417 LN:79--91, doi: 10.1007/978-3-319-64203-1_6

E Georganas, M Ellis, R Egan, S Hofmeyr, A Buluç, B Cook, L Oliker, K Yelick, "MerBench: PGAS benchmarks for high performance genome assembly", Proceedings of PAW 2017: 2nd Annual PGAS Applications Workshop - Held in conjunction with SC 2017: The International Conference for High Performance Computing, Networking, Storage and Analysis, 2017, 2017-Jan:1--4, doi: 10.1145/3144779.3169109