Giulia Guidi, Marquita Ellis, Daniel Rokhsar, Katherine Yelick, Aydın Buluç,"BELLA: Berkeley Efficient Long-Read to Long-Read Aligner and Overlapper (preprint)",submitted,2017,doi: https://doi.org/10.1101/464420
Conference Papers
M Ellis, E Georganas, R Egan, S Hofmeyr, A Buluç, B Cook, L Oliker, K Yelick,"Performance characterization of de novo genome assembly on leading parallel systems",Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics),2017,10417 LN:79--91,doi: 10.1007/978-3-319-64203-1_6
E Georganas, M Ellis, R Egan, S Hofmeyr, A Buluç, B Cook, L Oliker, K Yelick,"MerBench: PGAS benchmarks for high performance genome assembly",Proceedings of PAW 2017: 2nd Annual PGAS Applications Workshop - Held in conjunction with SC 2017: The International Conference for High Performance Computing, Networking, Storage and Analysis,2017,2017-Jan:1--4,doi: 10.1145/3144779.3169109
