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Zarija Lukić

Zarija Lukić
Research Scientist
Phone: +1 510 486 7378
Fax: +1 510 486 4300
Computational Research Division

Zarija Lukić is a research scientist in the Computational Cosmology Center.  He earned astrophysics Ph.D. in 2008 at the University of Illinois at Urbana-Champaign, and was postdoctoral researcher in the Theoretical Division of Los Alamos National Laboratory (2008-2011), and Computational Research Division of Lawrence Berkeley Lab (2011-2013).

Zarija's research combines (astro)physics and high-performance computing and he has published research articles in both physics and computational science venues.  Main topic of his research is the formation of structure in the Universe, and different ways of determining cosmological parameters from sky surveys.  His studies include modeling the Lyman-alpha absorption observed in spectra of distant quasars, evolution and properties of clusters of galaxies, internal structure and statistical properties of dark matter halos, and others.  He is a member of Dark Energy Spectroscopic Instrument (DESI) and Large Synoptic Survey Telescope (LSST) collaborations where he is engaged in simulation working groups.  Essential part of Zarija's research is finding new computational algorithms for modeling physical systems and building simulation codes which can efficiently run on largest supercomputers.  He was contributor to FLASH and HACC codes (2 times Gordon Bell finalist), and is one of core authors of multi-physics Nyx code used for intergalactic medium studies.  Over the past 15+ years, he utilized many leading machines at different supercomputer centers, including NERSC, National Center for Supercomputing Applications (NCSA), Los Alamos Supercomputer Center and Oak Ridge Leadership Computing Facility (OLCF), and has been the PI and co-PI on some of the largest computing allocations in the US.

In addition to cosmology, Zarija's research also includes topics in applied nuclear physics, and he has published research on the practical usage of cosmic rays to obtain material identification, and to remotely diagnose the state of damaged cores in Fukushima reactors.

Journal Articles

Jose Oñorbe, Joseph F. Hennawi, Zarija Lukić, and Michael Walther, "Constraining Reionization with the z ~ 5-6 Lyman-alpha Forest Power Spectrum: the Outlook after Planck", The Astrophysical Journal, 2017,

Frederick B. Davies, Joseph F. Hennawi, Anna-Christina Eilers, and Zarija Lukić, "A New Method to Measure the Post-Reionization Ionizing Background from the Joint Distribution of Lyman-alpha and Lyman-beta Forest Transmission", The Astrophysical Journal, 2017,

Anna-Christina Eilers, Frederick B. Davies, Joseph F. Hennawi, J. Xavier Prochaska, Zarija Lukić, and Chiara Mazzucchelli, "Implications of z ~ 6 Quasar Proximity Zones for the Epoch of Reionization and Quasar Lifetimes", The Astrophsyical Journal, 2017, 840:24,

Alberto Rorai, Joseph F. Hennawi, Jose Oñorbe, Martin White, J. Xavier Prochaska, Girish Kulkarni, Michael Walther, Zarija Lukić, and Khee-Gan Lee, "Measurement of the small-scale structure of the intergalactic medium using close quasar pairs", Science, 2017, 356:418,

Jose Oñorbe, Joseph F. Hennawi, and Zarija Lukić, "Self-consistent Modeling of Reionization in Cosmological Hydrodynamical Simulations", The Astrophysical Journal, 2017, 837:106,

Alex Krolewski, Khee-Gan Lee, Zarija Lukić, and Martin White, "Measuring Alignments between Galaxies and the Cosmic Web at z ~ 2-3 Using IGM Tomography", The Astrophysical Journal, 2017, 837:31,

Brian Friesen, Ann Almgren, Zarija Lukić, Gunther Weber, Dmitriy Morozov, Vincent Beckner, Marcus Day, "In situ and in-transit analysis of cosmological simulations", Computational Astrophysics and Cosmology, 2016, 3 (4):1-18,

Daniele Sorini, José Oñorbe, Zarija Lukić, Joseph Hennawi, "Modeling the Lyman-alpha Forest in Collisionless Simulations", The Astrophysical Journal, 2016, 827:97,

Dmitriy Morozov and Zarija Lukić, "Master of Puppets: Cooperative Multitasking for In Situ Processing", HPDC, 2016, 285,

Salman Habib, Adrian Pope, Hal Finkel, Nicholas Frontiere, Katrin Heitmann, David Daniel, Patricia Fasel, Vitali Morozov, George Zagaris, Tom Peterka, Venkatram Vishwanath, Zarija Lukić, Saba Sehrish, Wei-keng Liao, "HACC: Simulating sky surveys on state-of-the-art supercomputing architectures", New Astronomy, 2016, 42:49,

M. A. Patwary, S. Byna, N. Satish, N. Sundaram, Z. Lukić, V. Roytershteyn, M. Anderson, Y. Yao, Prabhat, P. Dubey, "BD–CATS: Big Data Clustering at Trillion Particles Scale", Supercomputing, 2015, 6,

Zarija Lukić, Casey Stark, Peter Nugent, Martin White, Avery Meiksin, Ann Almgren, "The Lyman α forest in optically thin hydrodynamical simulations", Monthly Notices of the Royal Astronomical Society, 2015, 446:3697,

Salman Habib, Vitali Morozov, Nicholas Frontiere, Hal Finkel, Adrian Pope, Katrin Heitmann, Kalyan Kumaran, Venkat Vishwanath, Tom Peterka, Joe Insley, David Daniel, Patricia Fasel, Zarija Lukić, "HACC: Extreme Scaling and Performance Across Diverse Architectures", Supercomputing, 2013, 6,

Alexander Knebe, Frazer R. Pearce, Hanni Lux, Yago Ascasibar, Peter Behroozi, Javier Casado, Christine Corbett Moran, Juerg Diemand, Klaus Dolag, Rosa Dominguez-Tenreiro, Pascal Elahi, Bridget Falck, Stefan Gottlöber, Jiaxin Han, Anatoly Klypin, Zarija Lukić, Michal Maciejewski, Cameron K. McBride, Manuel E. Merchán, Stuart I. Muldrew, Mark Neyrinck, Julian Onions, Susana Planelles, Doug Potter, Vicent Quilis, Yann Rasera, Paul M. Ricker, Fabrice Roy, Andrés N. Ruiz, Mario A. Sgró, Volker Springel, Joachim Stadel, Paul M. Sutter, Dylan Tweed, Marcel Zemp, "Structure finding in cosmological simulations: the state of affairs", Monthly Notices of the Royal Astronomical Society, 2013, 435:1618,

C. L. Morris, Jeffrey Bacon, Konstantin Borozdin, Haruo Miyadera, John Perry, Evan Rose, Scott Watson, Tim White, Derek Aberle, J. Andrew Green, George G. McDuff, Zarija Lukić, Edward C. Milner, "A new method for imaging nuclear threats using cosmic ray muons", AIP Advances, 2013, 3:082128,

Haruo Miyadera, Konstantin N. Borozdin, Steve J. Greene, Zarija Lukić, Koji Masuda, Edward C. Milner, Christopher L. Morris, John O. Perry, "Imaging Fukushima Daiichi reactors with muons", AIP Advances, 2013, 3:052133,

John Perry, Mara Azzouz, Jeffrey Bacon, Konstantin Borozdin, Elliott Chen, Joseph Fabritius II, Edward Milner, Haruo Miyadera, Christopher Morris, Jonathan Roybal, Zhehui Wang, Bob Busch, Ken Carpenter, Adam A. Hecht, Koji Masuda, Candace Spore, Nathan Toleman, Derek Aberle and Zarija Lukić, "Imaging a nuclear reactor using cosmic ray muons", Journal of Applied Physics, 2013, 113:184909,

A. S. Almgren, J. B. Bell, M.J. Lijewski, Z. Lukić, E. Van Andel, "Nyx: A Massively Parallel AMR Code for Computational Cosmology", The Astrophysical Journal, 2013, 765:39,

C. L. Morris, Konstantin Borozdin, Jeffrey Bacon, Elliott Chen, Zarija Lukić, Edward Milner, Haruo Miyadera, John Perry, Dave Schwellenbach, Derek Aberle, Wendi Dreesen, J. Andrew Green, George G. McDuff, Kanetada Nagamine, Michael Sossong, Candace Spore, Nathan Toleman, "Obtaining material identification with cosmic ray radiography", AIP Advances, 2012, 2:042128,

Salman Habib, Vitali Morozov, Hal Finkel, Adrian Pope, Katrin Heitmann, Kalyan Kumaran, Tom Peterka, Joe Insley, David Daniel, Patricia Fasel, Nicholas Frontiere, Zarija Lukić, "The universe at extreme scale: multi-petaflop sky simulation on the BG/Q", Supercomputing, 2012, 4,

Konstantin Borozdin, Steven Greene, Zarija Lukić, Edward Milner, Haruo Miyadera, Christopher Morris, John Perry, "Cosmic Ray Radiography of the Damaged Cores of the Fukushima Reactors", Physical Review Letters, 2012, 109:152501,

Ujjaini Alam, Zarija Lukić, Suman Bhattacharya, "Galaxy Clusters as a Probe of Early Dark Energy", The Astrophysical Journal, 2011, 727:87,

Suman Bhattacharya, Katrin Heitmann, Martin White, Zarija Lukić, Christian Wagner, and Salman Habib, "Mass Function Predictions Beyond ΛCDM", The Astrophysical Journal, 2011, 732:122,

Alexander Knebe, Steffen R. Knollmann, Stuart I. Muldrew, Frazer R. Pearce, Miguel Angel Aragon-Calvo, Yago Ascasibar, Peter S. Behroozi, Daniel Ceverino, Stephane Colombi, Juerg Diemand, Klaus Dolag, Bridget L. Falck, Patricia Fasel, Jeff Gardner, Stefan Gottlöber, Chung-Hsing Hsu, Francesca Iannuzzi, Anatoly Klypin, Zarija Lukić, Michal Maciejewski, Cameron McBride, Mark C. Neyrinck, Susana Planelles, Doug Potter, Vicent Quilis, Yann Rasera, Justin I. Read, Paul M. Ricker, Fabrice Roy, Volker Springel, Joachim Stadel, Greg Stinson, P. M. Sutter, Victor Turchaninov, Dylan Tweed, Gustavo Yepes, Marcel Zemp, "Haloes gone MAD: The Halo-Finder Comparison Project", Monthly Notices of the Royal Astronomical Society, 2011, 415:2293,

Adrian Pope, Salman Habib, Zarija Lukić, David Daniel, Patricia Fasel, Nehal Desai, Katrin Heitmann, "The Accelerated Universe", Computing in Science and Engineering, 2010, 12:17,

Martin White, Adrian Pope, Jordan Carlson, Katrin Heitmann, Salman Habib, Patricia Fasel, David Daniel, and Zarija Lukić, "Particle Mesh Simulations of the Lyα Forest and the Signature of Baryon Acoustic Oscillations in the Intergalactic Medium", The Astrophysical Journal, 2010, 713:383,

Salman Habib, Adrian Pope, Zarija Lukić, David Daniel, Patricia Fasel, Nehal Desai, Katrin Heitmann, Chung-Hsing Hsu, Lee Ankeny, Graham Mark, "Hybrid petacomputing meets cosmology: The Roadrunner Universe project", Journal of Physics, 2009, 180:012019,

Zarija Lukić, Darren Reed, Salman Habib, Katrin Heitmann, "The Structure of Halos: Implications for Group and Cluster Cosmology", The Astrophysical Journal, 2009, 692:217,

Katrin Heitmann, Zarija Lukić, Patricia Fasel, Salman Habib, Michael S Warren, Martin White, James Ahrens, Lee Ankeny, Ryan Armstrong, Brian O'Shea, Paul M Ricker, Volker Springel, Joachim Stadel, Hy Trac, "The cosmic code comparison project", Computational Science & Discovery, 2008, 1:015003,

Zarija Lukić, Katrin Heitmann, Salman Habib, Sergei Bashinsky, Paul M. Ricker, "The Halo Mass Function: High-Redshift Evolution and Universality", The Astrophysical Journal, 2007, 671:1160,

Katrin Heitmann, Zarija Lukić, Salman Habib, and Paul M. Ricker, "Capturing Halos at High Redshifts", The Astrophysical Journal, 2006, 642:85,

Conference Papers

E Lohrmann, Z Lukic, D Morozov, J Muller, "Programmable In Situ System for Iterative Workflows", Workshop on Job Scheduling Strategies for Parallel Processing, June 2, 2017,

Utkarsh Ayachit, Andrew Bauer, Earl P. N. Duque, Greg Eisenhauer, Nicola Ferrier, Junmin Gu, Kenneth Jansen, Burlen Loring, Zarija Lukic, Suresh Menon, Dmitriy Morozov, Patrick O Leary, Michel Rasquin, Christopher P. Stone, Venkat Vishwanath, Gunther H. Weber, Brad Whitlock, Matthew Wolf, K. John Wu, E. Wes Bethel, "Performance Analysis, Design Considerations, and Applications of Extreme-scale In Situ Infrastructures", ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis (SC16), Salt Lake City, UT, USA, 2016, 921-932, LBNL 1007264, doi: 10.1109/SC.2016.78


A. Aghamousa et al., "The DESI Experiment Part I: Science,Targeting, and Survey Design", arXiv:1611.00036, 2016,

A. Aghamousa et al., "The DESI Experiment Part II: Instrument Design", arXiv:1611.00037, 2016,

S. Habib, R. Roser, R. Gerber, K. Antypas, K. Riley, T. Williams, J. Wells, T. Straatsma, A. Almgren, J. Amundson, S. Bailey, D. Bard, K. Bloom, B. Bockelman, A. Borgland, J. Borrill, R. Boughezal, R. Brower, B. Cowan, H. Finkel, N. Frontiere, S. Fuess, L. Ge, N. Gnedin, S. Gottlieb, O. Gutsche, T. Han, K. Heitmann, S. Hoeche, K. Ko, O. Kononenko, T. LeCompte, Z. Li, Z. Lukic, W. Mori, P. Nugent, C.-K. Ng, G. Oleynik, B. O'Shea, N. Padmanabhan, D. Petravick, F.J. Petriello, J. Power, J. Qiang, L. Reina, T.J. Rizzo, R. Ryne, M. Schram, P. Spentzouris, D. Toussaint, J.-L. Vay, B. Viren, F. Wurthwein, L. Xiao, "ASCR/HEP Exascale Requirements Review Report", arXiv:1603.09303, 2016,