The
Biological Data Management and Technology Center, established
in January 2004 under Victor Markowitz, has been staffing up
to meet its goal of applying industry practices to developing
robust systems for managing the increasingly complex data being
produced by life sciences groups.
Krishna Palaniappan, Ernest Szeto, Frank Korzeniewski, and
Rene Perrier have recently joined the center. They are currently
working on the new metagenomics project at the Joint Genome
Institute (JGI), as well as helping introduce software and
system development practices to the JGI informatics organization.
They were previously senior members of Gene Logic's Data Management
Systems organization, and key contributors to the company's
software products, including Gene Logic's flagship Genesis
platform for gene expression data management and analysis.
Prior to joining Gene Logic, Krishna Palaniappan was a member
of the Genome Data Base (GDB), hosted at the Johns Hopkins
School of Medicine in Baltimore, where she worked on the design
of the GDB schema and its implementation using the OPM (Object-Protocol
Model) tools. Krishna has a bachelor's degree in biology from
the University of Madras, India, and a master's in computer
science from Northern Illinois University. Krishna's interests
are in biology and computational genomics. She enjoys reading,
cooking and traveling, especially to visit her family in India.
Like Victor Markowitz, Ernest Szeto was a member of the Data
Management Group in the Computing Science Research Division
at LBNL before joining Gene Logic. At the Lab, Ernest worked
on developing data management and integration tools, first
based on the Extended Entity-Relationship Model (EERM) and
then on the Object-Protocol Model (OPM). The tools developed
by Ernest have been widely used at LBNL and at other sites
for developing scientific databases. Ernest has a bachelor's
degree in engineering from Stanford University and has interests
in the study of religion and spirituality.
Before joining Gene Logic, Frank Korzeniewski had a long
software engineering career that included developing streaming
video input/output libraries and other tools at GlobalStreams
Inc., an Internet video company, writing compilers at Ask
Jeeves, an Internet search company, and developing large-scale
data monitoring applications at Pacific Bell. He occasionally
designs and develops hardware, such as video rate digitizers
and single board computers in multiprocessor systems, and
he is keenly interested in photography.
René Perrier previously worked at BioRad Laboratories
developing image analysis and display applications for 1D
and 2D electrophoresis gels and the front end to a proteomics
database data-mining tool. He also worked at the Geneva University
Hospital developing imaging software for 2D electrophoresis
gels and for medical image manipulation and display. A native
of Geneva, Switzerland, René Perrier earned a bachelor's
degree in computer science from Geneva University. His hobbies
include cooking, rock climbing, hiking and camping in the
California wilderness.
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