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Dan Bonachea

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Dan Bonachea
Computer Systems Engineer

 

 

Journal Articles

Katherine A. Yelick, Dan Bonachea, Wei-Yu Chen, Phillip Colella, Kaushik Datta, Jason Duell, Susan L. Graham, Paul Hargrove, Paul N. Hilfinger, Parry Husbands, Costin Iancu, Amir Kamil, Rajesh Nishtala, Jimmy Su, Michael L. Welcome, Tong Wen, "Productivity and performance using partitioned global address space languages", Parallel Symbolic Computation (PASCO), 2007,

Katherine Yelick, Paul Hilfinger, Susan Graham, Dan Bonachea, Jimmy Su, Amir Kamil, Kaushik Datta, Phillip Colella, and Tong Wen, "Parallel Languages and Compilers: Perspective from the Titanium Experience", The International Journal Of High Performance Computing Applications, June 16, 2006, 21,

We describe the rationale behind the design of key features of Titanium—an explicitly parallel dialect of JavaTM for high-performance scientific programming—and our experiences in building applications with the language. Specifically, we address Titanium’s Partitioned Global Address Space model, SPMD parallelism support, multi-dimensional arrays and array-index calculus, memory management, immutable classes (class-like types that are value types rather than reference types), operator overloading, and generic programming. We provide an overview of the Titanium compiler implementation, covering various parallel analyses and optimizations, Titanium runtime technology and the GASNet network communication layer. We summarize results and lessons learned from implementing the NAS parallel benchmarks, elliptic and hyperbolic solvers using Adaptive Mesh Refinement, and several applications of the Immersed Boundary method. 

Conference Papers

R. Nishtala, P. Hargrove, D. Bonachea, K. Yelick, "Scaling Communication-Intensive Applications on BlueGene/P Using One-Sided Communication and Overlap", 23rd International Parallel & Distributed Processing Symposium (IPDPS), Rome, May 2009,

D. Bonachea, P. Hargrove, M. Welcome, K. Yelick, "Porting GASNet to Portals: Partitioned Global Address Space (PGAS) Language Support for the Cray XT", Cray Users Group (CUG), May 2009,

Katherine Yelick, Dan Bonachea, Wei-Yu Chen, Phillip Colella, Kaushik Datta, Jason Duell, Susan L. Graham, Paul Hargrove, Paul Hilfinger, Parry Husbands, Costin Iancu, Amir Kamil, Rajesh Nishtala, Jimmy Su, Michael Welcome, Tong Wen, "Productivity and Performance Using Partitioned Global Address Space Languages", Parallel Symbolic Computation (PASCO'07), July 2007,

Partitioned Global Address Space (PGAS) languages combine the programming convenience of shared memory with the locality and performance control of message passing. One such language, Unified Parallel C (UPC) is an extension of ISO C defined by a consortium that boasts multiple proprietary and open source compilers. Another PGAS language, Titanium, is a dialect of Java T M designed for high performance scientific computation. In this paper we describe some of the highlights of two related projects, the Titanium project centered at U.C. Berkeley and the UPC project centered at Lawrence Berkeley National Laboratory. Both compilers use a source-to-source strategy that translates the parallel languages to C with calls to a communication layer called GASNet. The result is portable highperformance compilers that run on a large variety of shared and distributed memory multiprocessors. Both projects combine compiler, runtime, and application efforts to demonstrate some of the performance and productivity advantages to these languages.

Presentation/Talks

Yili Zheng, Filip Blagojevic, Dan Bonachea, Paul H. Hargrove, Steven Hofmeyr, Costin Iancu, Seung-Jai Min, Katherine Yelick, Getting Multicore Performance with UPC, SIAM Conference on Parallel Processing for Scientific Computing, February 2010,

Paul H. Hargrove, Dan Bonachea, Christian Bell, Experiences Implementing Partitioned Global Address Space (PGAS) Languages on InfiniBand, OpenFabrics Alliance 2008 International Sonoma Workshop, April 2008,

Dan Bonachea, Rajesh Nishtala, Paul Hargrove, Katherine Yelick, Efficient Point-to-Point Synchronization in UPC, 2nd Conf. on Partitioned Global Address Space Programming Models (PGAS06), October 4, 2006,

Posters

Dan Bonachea, Rajesh Nishtala, Paul Hargrove, Mike Welcome, Kathy Yelick, "Optimized Collectives for PGAS Languages with One-Sided Communication", Poster Session at SuperComputing 2006, November 2006,

Dan O Bonachea, Christian Bell, Rajesh Nishtala, Kaushik Datta, Parry Husbands, Paul Hargrove, Katherine Yelick, "The Performance and Productivity Benefits of Global Address Space Languages", Poster Session at SuperComputing 2005, November 2005,

Christian Bell, Dan Bonachea, Wei Chen, Jason Duell, Paul Hargrove, Parry Husbands, Costin Iancu, Wei Tu, Mike Welcome, Kathy Yelick, "GASNet 2 - An Alternative High-Performance Communication Interface", Poster Session at SuperComputing 2004, November 9, 2004,