# Publications 1983-2008

## 2008

D. Ambrose and J. Wilkening, *Global paths of time-periodic solutions of the Benjamin-Ono equation connecting arbitrary traveling waves*, LBNL-1298E, 2008.

D.M. Ambrose and J. Wilkening, *Time-periodic solutions of the Benjamin-Ono equation*, LBNL-1306E, 2008.

J. Andrews and J.A. Sethian, *Fast marching methods for the continuous traveling salesman problem*, LBNL-1313E, 2008.

A. Arenas, A. Fernandez, and S. Gomez, *A complex network approach to the determination of functional groups in the neural system of C. elegans*, "Bio-Inspired Computing and Communication," Lect. Notes Comp. Sci. 5151 (2008), pp. 9-18.

A. Arenas, A. Fernandez, and S. Gomez, "Multiple resolution of the modular structure of complex networks," *New J. Phys.* 10 (2008), pp. 05039-053067.

A. Arenas, A. Fernandez, S. Fortunato, and S. Gomez, "Motif-based communities in complex networks," *J. Phys. A: Mathematical and Theoretical*, 41 (2008), pp. 224001-224009.

A. Arenas, A. Diaz-Guilera, J. Kurths, Y. Moreno, and C. Zhou, "Synchronization in complex networks," *Phys. Rep*., 469 (2008), pp. 93-153.

G.I. Barenblatt, "A mathematical model of turbulent drag reduction by high-molecular-weight polymeric additives in a shear flow," *Phys. Fluids*, 20 (2008), pp. 091702-1-091702-3.

G.I. Barenblatt, "Energy of Tycho's Supernova Remnant is increasing with time," *Proc. Natl. Acad. Sci. USA*, 105 (2008), pp 1124-1125.

G.I. Barenblatt, *Shear flow laminarization by suspended heavy particles: theory and geophysical applications*, Lawrence Berkeley Natl. Lab., MATH-PUB-5, January 2008.

J.J. Benedetto and J.J. Donatelli, "Frames and a vector valued ambiguity function," *Proc. Asilomar Conference on Signals, Systems, and Computers*, October 2008.

J. Borge and A. Arenas, *A computational model to disentangle semantic information embedded in word association norms*, arXiv:0812.3070v1 [cs.CL], 2008.

A. Chorin, "Monte Carlo without chains," *Comm. Appl. Math. Comp. Sci.*, 3 (2008), pp. 77-93.

L. Danon, A. Arenas, and A. Diaz-Guilera, *Impact of** community structure on information transfer*, Phys. Rev. E, 77 (2008), pp. 036103.

A. Diaz-Guilera and A. Arenas, "Phase patterns of coupled oscillators with application to wireless communication," *Bio-Inspired Computing and Communication*, Lect. Notes Comp. Sci., 5151 (2008), pp. 184-191.

M. Garzon, J.A. Sethian, and L. Gray, "Numerical simulation of non-viscous liquid pinch off using a coupled level set boundary integral method," *Proc. Applied Mathematics and Mechanics, ICIAM 2007*, Wiley, 2008.

M. Garzon, N. Bobillo-Ares, and J.A. Sethian, "Some free boundary problems in potential flow regime using a based Level Set method," *Recent Advances in Fluid Mechanics*, Nova Publishers, 2008.

D. Givon and I.G. Kevrekidis, "Multiscale integration schemes for jump-diffusion systems," *SIAM Multiscale Model. Simul.* (2008).

J. Huh and J.A. Sethian, "Exact sub-grid interface correction schemes for elliptic interface problems," LBNL-62333,* Proc. Natl. Acad, Sci. USA*, 105 (2008), pp. 9874--9879.

D.W. Knowles, J. Cardena, P. Abad, D.M. Ushizima, J.A. Sethian, S.S. Badve, and S.A. Lelièvre, "Epigenetic image-based screen for breast cancer," *Ninth Principal Investigators Meeting for the Innovative Molecular Analysis Technologies* (IMAT), Poster LBNL-1433E, 2008.

J. K. Kominiarczuk and W. F. Spotz, "Higher order compact generalized finite difference method," *Applied Mathematics Principal Investigators' Meeting*, Argonne National Lab, LBNL-1304E Abs., 2008.

S. Lozano, A. Arenas, and A. Sanchez, "Community connectivity and heterogeneity: clues and insights on cooperation on social networks," *J. Econom. Interaction and Coordination*, 3 (2008), pp. 183-199.

S. Lozano, A. Arenas, and A. Sanchez, "Mesoscopic structure conditions the emergence of cooperation on social networks," *PLoS ONE*, 3 (2008), pp. e1892-e1903.

C.I.O. Martins, R.M.S. Veras, G.L.B. Ramalho, F.N.S. Medeiros, and D. M. Ushizima, "Automatic microaneurysm detection and characterization through digital color fundus images," *Brazilian Artificial Intelligence Community Conference, Tenth Brazilian Symposium on Neural Networks*, Proc. IEEE SBRN, 2008.

J. Peraire and P.-O. Persson, "The compact discontinuous Galerkin (CDG) method for elliptic problems," *SIAM J. Sci. Comput.*, 30 (2008), pp. 1806-1824.

P.-O. Persson and J. Peraire, "Newton-GMRES preconditioning for discontinuous Galerkin discretizations of the Navier-Stokes equations," *SIAM J. Sci. Comput.*, 30 (2008), pp. 2709-2733.

M. Roper, T.M. Squires, and M.P. Brenner, "Symmetry unbreaking in the shapes of perfect projectiles," *Phys. Fluids*, (2008), 20:093606.

M. Roper, R. Dreyfus, J. Baudry, M. Fermigier, J. Bibette, and H.A. Stone, "Do magnetic micro-swimmers move like eukaryotic cells?," *Proc. Roy. Soc. A*, (2008), 464:877-904.

J.A. Sethian and Y. Shan, "Solving partial differential equations on irregular domains with moving interfaces, with applications to superconformal electrodeposition in semiconductor manufacturing," *J. Comput. Phys*., 227 (2008), pp. 6411-6447.

X. Tu, *A Three-level BDDC algorithm for saddle point problems*, LBNL-1319E, 2008.

X. Tu and J. Li, "A balancing domain decomposition method by constraints for advection-diffusion problems," *Commun. Appl. Math. Comput. Sci.*, 3 (2008), pp. 25-60.

X. Tu. and J. Li, "BDDC for nonsymmetric positive definite and symmetric indefinite problems," *Proc. Eighteenth International Conference on Domain Decomposition Methods*, 2008.

D.M. Ushizima and E.W. Bethel, "Pattern recognition on biomedical datasets," *SIAM Imaging Science Conference*, 2008.

D. Ushizima, O. Rübel, P, Gunther Weber, E. W. Bethel, C. Aragon, C. Geddes, E. Cormier-Michel, B. Hamann, P. Messmer, and H. Hagen, "Automated analysis for detecting beams in laser wakefield simulations," *2008 Seventh International Conference on Machine Learning and Applications*, Proc. IEEE ICMLA'08, 2008.

M. Westdickenberg and J. Wilkening, *Variational particle scheme for the porous medium equation and for the system of isentropic Euler equations*, LBNL-1296E, 2008.

J. Wilkening, *A trust region method for the computation of quadrature rules for arbitrary families of functions*, LBNL MATH-PUB-7, 2008.

J. Wilkening, *An infinite branching hierarchy of time-periodic solutions of the Benjamin-Ono equation*, LBNL-1297E, 2008.

J. Wilkening, *Computation of stable representations of corner singularities of elliptic systems in the plane*, LBNL MATH-PUB-8, 2008.

J. Wilkening, *Extended first order system least squares finite elements for the Lamè and Stokes equations on plane domains with corners and interface junctions*, LBNL MATH-PUB-9, 2008.

J. Wilkening, "Inf-sup estimates for the Stokes problem in a periodic channel," *SIAM J. Math. Anal*., (2008).

J. Wilkening, *Inf-sup estimates for the Stokes problem in a periodic channel*, LBNL-1295E, 2008.

J. Wilkening and Jia Yu, *A local construction of the Smith normal form of a matrix polynomial*, LBNL-1294E, 2008.

J. Wilkening and A.E. Hosoi, "Shape optimization of a sheet swimming over a thin liquid layer," *J. Fluid Mech*., 601 (2008), pp. 25-61.

D. Willis, E. Israeli, P.-O. Persson, M. Drela, and J. Peraire, "Multifidelity approaches for the computational analysis and design of effective flapping wing vehicles," *Proc. 46th AIAA Aerospace Sciences Meeting*, Paper AIAA-2008-518, 2008.